GgaINT0049811 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36824299-36825357:-
Coord C1 exon
chr7:36825253-36825357
Coord A exon
chr7:36824410-36825252
Coord C2 exon
chr7:36824299-36824409
Length
843 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTTCTCCTTATTCTCATTAGAAA
3' ss Score
7.14
Exon sequences
Seq C1 exon
GTGAAATACAAGGAAAAGTATGAGAAGGAAAAAGGCAAACCTATGCTGGACTTTGAAACTCCAACATACCTAACTGCAAAGGAATCTCAGCTCATGCAGAGTGAG
Seq A exon
GTAAGGTTGAAATGAATACTTACAGGCTAGAGAAACTTCAACATCTATTTTTTTTATAGTTAAACTTTCACATTTATTTACACTTGCAATTATACTTCTGTCTTGTGTATGCCAATGGTTTGAGAAATTGTCATGTTTCTTTATACTGGTTATAGGATATTATTTAAGAATCTTGTTGTTTTCCTGTGTCACTGTGAAGTGTATATTTTCTGTAATTTTTCAAGAAGCTGTTAGTAAGTTGCGCTTAAGGAAATCTTTGAGTGTCTAGAAGAAATGCTGAATAAAATACACTTCACTTAAACTCTTGCCACAGGAACATGTTATGTATGTCAGCTACCATCGTCCACAGAAAATATGCTGGTTAACCTTTTCATCTGAGAACTCTGTTTGAAACACCCACTTACTGCCTGTTTGTCTCCATTGTCACAGTGTTCTTCACTGTCATTCTATTTCCCGAGGCAGTTATTTTTTGTTCGTTGTAAGTATTATCTTGTTCTGTTGCAGATGAAGTACCCATCTTGAAAAACATTTGTACGAGGCCCTTAGTCATTGTGTTTGAATGACCGCATTAAATGTTTTCTCTGCACGTACAAATATGTAGGAAACAAACAAACAAGCATAATGTCAGGTCATATTTGCATTGGAATTAATGAGCTATTTAAAGGACATCAACAGAAAGAAGATTTATTAATGTAGCTATCGGCAGCACTGGCTGCAGGAGATCATCGCTGTGCCATTAATACCAAACTGCTGCTCCTTCATTCTCCCAGAAGTTTTTCATGTAATTAAGAATAATGTAATAAGTATTTGCTATTTTGCTTTTTTTCTCCTTATTCTCATTAG
Seq C2 exon
AAAGAATATAAGAGGGACTTTGAAGAGTCCATTAAGGGCAGAAACCTTACTGGCTTGGAGATAACACCATCCTTATTACATGTCAAATATGCAACCAAAATAGCAAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:123
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAAGTATGAGAAGGAAAAAGGC
R:
CTCGCTTGCTATTTTGGTTGCA
Band lengths:
206-1049
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]