GgaINT0049816 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36821283-36822121:-
Coord C1 exon
chr7:36822017-36822121
Coord A exon
chr7:36821388-36822016
Coord C2 exon
chr7:36821283-36821387
Length
629 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
TACTACAACTTTTTCAACAGCTT
3' ss Score
5.88
Exon sequences
Seq C1 exon
AAAAAGTACAAGGAAGAGGCAGAAAAGACCATGCCATACTATGTGCCTGTAGCAGACACACCAGAAATGCAGAGAGTCCGTGAGAATCAAAAGAACTTCAGCACG
Seq A exon
GTACGTGTACACGCAGTCCATATTGCTGCTATCAAATAGTAAAAAAAAAAAAAAAAAAAAAATGTACAGCTTGTTTTGTTGCTTCATAAGGTCCAAATACCACACTTAAATCCCTCCTGGACTACCTTTGTATTCTCAGTGATCCCCATCCAGGTCCTCCCCAATGTATACAGCAGCCCTCTCACACAGAGGAACAAAACGGGTCTCTGACCTTCTTGGAACAAAACTTCTTTCTGCTGTGTTTTGACAATTCCTTTACTAATAATAAAGAATTACAGAAGTTGTTAGATGGGAATAAATGCAAGATTTTATGGTCAGAAACATGGACAGTTTCTTGTTCATGTTCTTGAGTTCTTGTGGCTCAAAATCTTTAATTGTTGAGAAAGGTGCCACAATCTGGCACCTTTCAAGACTTTTGATGGAGATAGTTCATCTCCTGTTACAAATTTAAGTCAGAATAGTTATAACTGTATGTCTTAATATCACTGATGGTGATGTTAAAATGAACACCTTAAAAGGTGTACTTGAAAATATTTTTCTTAGTTTCAAAGAAAGCTCTGTGGGTAAATTCTTATGGCATAAAGTCAGCATTTGACCTCTTTTGACTTCTACTACAACTTTTTCAACAG
Seq C2 exon
CTTCAGTATCAGTGGGACCTACAGAACAGTAAAGGGAAAGTTACAGTTGTACAAGATACACCAGAAATGCTGCGTGTGAAAGAGAACCAGAAGAATTTCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:128
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.257
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACAAGGAAGAGGCAGAAAAGAC
R:
CGAGCTGAAATTCTTCTGGTTCT
Band lengths:
206-835
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]