GgaINT0049824 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36804781-36805614:-
Coord C1 exon
chr7:36805522-36805614
Coord A exon
chr7:36804874-36805521
Coord C2 exon
chr7:36804781-36804873
Length
648 bp
Sequences
Splice sites
5' ss Seq
TCGGTATCG
5' ss Score
3.78
3' ss Seq
GTGTATGCTGTACTCTGTAGGTG
3' ss Score
8.71
Exon sequences
Seq C1 exon
GTGTTGTACAAAGAGAGCTTGGGGAGAGCAACCCCCACCCCTATCACTCCCGAGATGGAGAGAGTGAAACGCAATCAAGAACAGATTAGCTCG
Seq A exon
GTATCGTCCACGAGGTGTAAAGGGGCTAAGATAGAGCTGTTGTTCTCTTTTTGAATGACCTAAGGTTGCCTGGTTTTTATTTAACCCTCTAATTTTTTGTAGAAACTTATAATGTCAAATTGTGGTACATACATATTTTTCATCACTTAACTTTTTAATATTTTTCCTCACTTATTTTTTCCCTTTCATAACGAATGGTGTTCATTCTAAAACCAGCCGTGATTACAGCTGTAATCTGTACACTTGTGACGTGGGGTTGCTTTGTGGTCTGTAGGTTGTGTACAAGGAAGGCTTAGGGAAGGCGACCCCCACGCCGGTCACTCCTGAGATGGAGCGAGTCAGACGCAACCAGGAACAAATCAGCTCGGTACTGAAAGAGGATGATACCTGCCTTAGATTGAAAATAACCCTTGTGAAGAAAAGCCACTTCTAATTCTGCCCTGTTCTCTCTCTCTGTTCCATGTTTTTGCCTATTTATTTCCCCTTTTCTCCCTTTTGCTCAAGCAAATAACTTCTTAGCAGCTTTATTTATTTCCCGAGATCTTTTCTGTCCCTGCGGTGCTGAGTATGCTTACCCAGTAACACCACCAGCAGAATGAGCTGCTGGGTTATCAGGTCTAACTTGTATGTGTATGCTGTACTCTGTAG
Seq C2 exon
GTGTTGTACAAAGAACACCTTGCAAAAGGAACCCCAACACCGATGACCCCCGAGATGGAGAGAGCAAAGCGCAACCAGGAAAACATCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:136
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.968
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(57.1=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(55.2=51.6)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTACAAAGAGAGCTTGGGG
R:
GCTGATGTTTTCCTGGTTGCG
Band lengths:
182-830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]