GgaINT0049901 @ galGal3
Intron Retention
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18782992-18783583:-
Coord C1 exon
chr7:18783495-18783583
Coord A exon
chr7:18783023-18783494
Coord C2 exon
chr7:18782992-18783022
Length
472 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
3' ss Seq
CTGTGTTTTAATTTTCATAGAGC
3' ss Score
7.54
Exon sequences
Seq C1 exon
GAATTTTATGTATCTGTGTCAGATGATACTAGAATGATTGCAGCACTAAAGGAGCAACTTCCAGAGCTAGAGAAAATTGTAAAGCAAGT
Seq A exon
GTAAGCAAAAATTTTGCTTCCTTCCTTCTTGTTCTTTGCTCTTTTTTCCAGTAAATAGATGAAGAAAATTATTTCTTATATCTTTTAAAATTGTGTTTTGTGAATGGCACTCAGTCACTGCAGACTGAATGTTTTTATGCAGACTTGTTTGGATGAATGCCTATGACCCTGTCTTTCCATGTAATTCCTGCATACATTGAACTGCCTCATAAGAGGGTTGACAGAAGGAATAAGGAATTATGTATACACCATTGAAACTAAACTGCGTGCTTGTATGAACCTCGTGTAGTATTTTTTCTGCCTTCGTTGTGGTATAGTTTACCTGAGTATCATCCAGTCTTCTTTTCCTATATACAAACATGAAGGTGTTGATACTGTAGTTTGACAAGTGGTCCGTGTTCTTTAGGTGGCTTTGTGCACAAAATCTTTTAGGCGATATCTAATGATATATGCTGTGTTTTAATTTTCATAG
Seq C2 exon
AGCTGAGGAACCTAAAGCACCACAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357:ENSGALT00000015238:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(0.9=3.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]