GgaINT0049908 @ galGal3
Intron Retention
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18764265-18766510:-
Coord C1 exon
chr7:18766420-18766510
Coord A exon
chr7:18764316-18766419
Coord C2 exon
chr7:18764265-18764315
Length
2104 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATTTTTGTTTTTATTAACAGAAA
3' ss Score
9.01
Exon sequences
Seq C1 exon
CTGTAAAGAATACAAAAATCTGAATTCCTTTTTCGCTATTATTATGGGACTGAGTAATGTTGCCGTGAGCCGTCTGTCACTGACATGGGAG
Seq A exon
GTAAGTCCTAGCTACAGCCCAATTCCAAGGAGTTTGACTGGTATTTCTGCTTTTAGTTAGCAAAAACGTGTTAGGTCTTTATTACTGGAAATGCTAGCCCTAATTATTCAGGTCCTGAGCAGAAGCCTTCAGCTTAGGGTGATAATTTGTATTGGTGAGGCAGTATACCCGTAGGTGTGCTCAGTGCTCACAAGCAGTTAACAAGTGTGACAGCACCAGCTTTATTACCTGCATTGCCCAACAGGATAAGCAATGCAGCCTCTTACATCAGCCCATCCCCTCGCTGACTTTACTGGCCATCTGTTGAGATCACTCGTATGCTGTTCTCTAAAATGCATCCTCTATTTGTACGTATTATTTTCTGATCTCTATATGGACTCTGTTACCCTAATAACATATGGGTTCTGTTTTTCTCTCTGGTATGTCACCTCGATTGCTGTCAGTGTGGGCTTCCCTCTCAGAGCTTCCACTTGTTTCTGTAGCTTTGTTCTTTTCTTTGTCAGTATCCAGAAAGGGCACCGTGTCCAGCGGGATGAGGCAGTAAACACGTGTAACCCCTAGGAACATTCTGGTTGTCAAAAGCAGTGCAGATCTGAATGTGTGTGTATTTCCTTCATTAGAAACGGAAATAGTTGGCATGATGCAACTGAGACCAGGATTTGAACACCTGAAGAAGTGGTCTGAAATAGGAGTTCAAACTAACACACCTGAGAAGGCACCAGCCCGATCTGCGCTAGTGTGTGTTGCAAGCAGTGTATACAGTCAGCACTGAAATCAAAGATTTGCAGATCAGTTTCACAAAATAGTGACCTTTCATTCGTGGGTAGAGAGAGGAATAGTTGGGAGAGCTGTGGCAGTACAGGCGCTGTATGAAGACAAAAGAGGTACCTGGAGTTACCTCAGCAGTCTGAAGTGGACGTCATCTGTTAGTGTTAGCGAACCTGAGCTCAGCAAATGTTATCACACTGCTTGTGTAGGGCAGTCAGTCAGTTTGCCAGGAGAATCTCTGCAGCTTGATTTTTAAACCTTATACGTGTATAGATTATGCTAAAATCCAAACATCTAAAGACCTGATTTTTGCTGTATTGTCATGCATTTACATTAGTTGCATGCACAAATTAGATATTTGCAGGTGCAAATGTCCAATTATACCACTTATTTCACAAATACCTAATCTGCATGCATATGCAAAGTAGGCAGACAGTTGTTCACACACATCATTAAAAATTAGGCCCTTGCTGTGGCACACTGTAAATATCTTGCTAGGGCACACACTCTAAATGTAGGAAGTATTGAAAAAAACCATCTCTGCACTATAAAGTCTCTTAATTTTTAATGTTGCTCGCTGCCAATAGTAGTTTATCAAAACAAGAAAGCTGACATCGTCTGAGTGTGCATAAAAAGTTGCTCTGATCTCTGAATAATTTGTAACACATCTTATTGTCTTTATAGAAAAATATCATTTAATATGTCTAAAATAGTACGAGAGGGAAAAATATTTACTAACACCTATTTCACACTATTTGCTGTGCAACCAACTGGCCATATTTACAAGTGCAGGTATTGTGGACTAAAGTCTATTCATTAATTTATAGCCTAGAAAGCAGTAGAGACTGCTGGGCACATCAAGAATGCTGATGTATTGGCCAGAAAACCTTCTGGAAATGCCTAGGGGTGGACTTGAACGTTGTGAGGGCAGTTCCTTGTAGGTATGAATAATGAAGCCGAGCCACCCCTTCACAAGCTGTGTTTAATTTATATTTTGAGATAGAACGTCCTGGAGCCACCCGCTTAACTTTCACTGCCATTCTGAATTCAGTGATTGCAATGTGAACCAAACAAATATCTGAATCTGAACATCCCATAGGAGTACACTGAAGTTGGGATTTAGATCAGGATGCAGGTTTCATGGCTGGTCCCGTCTCTATTTATAATCTGGTTGCTAGGAGACATGTTGTATTTTAGATTAGCACATTGTTAGAAATATCTGGCAAAAAGAGCACTTTCCTGACTTAGGGCGTTGTAGAAGGAACCAGCATTTACAGTAAAATTACCGTACAAATTGGATTTAATTAAGTTTTGCTATTTTTGTTTTTATTAACAG
Seq C2 exon
AAACTTCCAAGCAAGTTCAAGAAGATCTATGCAGAATTTGAAAGCTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357:ENSGALT00000015238:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(16.2=100)
A:
NA
C2:
PF0061714=RasGEF=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]