GgaINT0050301 @ galGal3
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23602738-23608000:-
Coord C1 exon
chr7:23607789-23608000
Coord A exon
chr7:23602890-23607788
Coord C2 exon
chr7:23602738-23602889
Length
4899 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGG
5' ss Score
4.44
3' ss Seq
CTCCCTTCCTGTGTGTCCAGGCC
3' ss Score
9.31
Exon sequences
Seq C1 exon
CCTTCCTGGACCCCGGGAACGTGTTTCTCAGGGCTGGGAGAAGCGCAAGCCCTGGGGCCAGGTGGCAAGTGGACAACGAGTTACCTATGACTTAAAGGAGAGGATGTGCATCGGCAGTATGACCACGCTGGAGAGTGCAGCATATCAGCGTGTCCCCACGGATGAGGCTGAGGCCCAGATGCTGGCATCTGCTGATTTGGATGGCATGAAAA
Seq A exon
GTGAGGTTTTACCACACTATAGCATGTTTGTCCTTTGCATCTCCCTGCTTTGCTCGCATTCCTGACAGTTCCACACACGATCTTCAGCCTCCCCTGACAGACCTGGTCCTCATTTCCCTGTCTCTCAGCCCCTGCTTTTCTACCTTTGACTCCTCTCTATCAGCTTTTTTGTATCCAGAGCTCTGGTCCCAAATTTCCACATGAGCCCAGTACCTCTCCTCCCACCCACCCCACAGGTGCCAGCCCTCCTCCACCCACCCCGCTGCCCTCTCCTTTTCAGGGCTCCTTGCCTTTCCCTGAGACCCAGCTCTCTCCTTTCCTGACACACTTTCCCAGTTAGCAGCCCTCTGTGTGACACACCAGCGCTGGGATCGCAGCCACCTGATGTGAGAAGCCTTCCCCCTCCTGCGTGCTGCTCGTAGAGAGGCAGCTGCCCCTTCCAAAATGCATCTGAGGGGGACTGCCCCTGCGTGCGCGTGAGGGCAGACAGGAGAGACGTCATGGAAATGCACGCTCTGGGCCTGAGGACATGGAGAATTCAATAGGTTGCTTTGCATGCTGGAGAGGGAGGGAGACACCGGAGGGGAGCGAGGGAGAGAAGCGGTGCTGCACGCGGAGCCTGCCTGTCCCTGGGCATCCAGCAAAGAGCCCGCGGCACAGCGAGGATCCTGCTCCGCAGAGCCCGAGGAATATTTCTCCCCAGGAACATCCCCGGGTGCAGCCATCCTCTCCAGGACCCCACCAGGCCCCAGCAGCTCCATGCCCTGTGCCCGGGGGAGCAAGGCACTGGGGCCTGCCCTAGGGCTGCGCTGAAACCCCCCCGGGGCAGCTCGCTTTCTGCACTTCAGCCTGGAAGCCCCAACCCTTCCTCGGAAGGTGAGTGGCTCATGGCACCTGACCTCTGACCTTCGCAAGGACAACATGAGCACCCTGAGGGAGGGCGAGGAGACGGCGAGGGAATTGGAAGAGGGCGGCAGCCCTGAAGCAGCAGTAAGTGCCCGCGTTCGCAACTCGCTCGGCTATGAAGACTTTGATGAATTTGCCTTCAATTTTGAAGACTATGATTTATGGGAGGCCATCAGAAACCACCTGGGTTACCCGGGTGGGGAGACCACCTGTAAGTACCAGAGCGGTGACCCCTGGGTGCAGCTGTAGAGCAGAGCCCCCAGCTGTAGTGCTTAGCCCTAACCCTGTGTTTGCTGTCTGCTGCTCTCCCTGTGTCAGATTGATCGGGTTTAGAGAAGGTACTGTCTGCCCCACTGCATGCAGCCCAGTGCCTGGGGGTGTTGGAGGAGCTGTCTGGTGTCTGTGTGTCAGTATGAGGTCTTTGTACGGATCCATTCTGTAGTATTGAGACGCATCCCTGTGTGCTTCTTGCTTGAGCAGCCCTGGAGGCAGCTGCCCCTTGCTGTTTATGCCCATCAGTATGTAACCCACATTGTGTCCAGAGGAAAAGCCTCTGCTCCCAGGCATATATAAGAATAGAGCAATGTCTCCTTCCATCTGTGGCACAAGGTGACAGTGTGCTGTTGCTCTCTGTTTGCTGGAATCCGAGCAGGGCTGCGGATCTGACAGCAGTGCTGGGTATCAGGTTCTCAGCTCTGTGCTGTAGACTAATGCCTGGAGGAGAAAATAAACTAGTCCCAGTGTCTGCAGGCTTGAATGTTGTTTGTGAAAGTAGCTAACGGCAAGCTGAGGGCCTAGGAAGGGGAAAGAGGCAGGAAGGAAGAGTGGGAATCGCAGGGTAGGAGAAAGTAGGAATCCCAGGAGCAAAGAGCGTCTTTCTGTTGTCTGCATGTTTCCTTACCCGTGCGCACCTTGTGGAGAAGTGGCTCTCGGAGCCATCCCAGAGGCTGCACAGAAAGCAGCACCTCGCTGCCACCTTGTACGGGCAGTCTTTTCTCAGCAGCTGAAGGTGGCTGTGTGTGTCACCTTGGGAGGGACACTGCTGGCAGTCATTGCTCCACGGCAGCTGCCCAAATATCCTCATCTGGATTGTGTTCTACGTGTTTCAAGGCATTGTACAAGTGCACAAAAGCAGGTGGCACGGCCCCAGAGCTATCCCAGGCTTTGCAAGCAGGTGTGGGGAGGCGGAGTGCAACATGGGCTCCAGAGGCTTGGTGCAGCTTCTGGCTCTACCACAGCCTTCTGGTATGATCTTAGGTAAAACAATTAACTGCTGATTCCTCAGTCCCAGCATCATTATTTCTGTCTCAACTAGTCCATCTTCGTAAGCCTTGCAGCCTCTGGGGGAGGAATGTCTGCCTATGTGCTTGTACAGGGACCAGCAAGCGGGGATTTGCTTCTGGCTGGGTCTGATACTTGTTACTGTAAATTCTTAGATAACTTAATAGGAGCAAAGTTGAAACTACAAACCTGGAGCTAATTGGCCCCGTCAGCTGTCCCAGGCTGAGCAACTTGTGAGTTAAGACTGTGAGCAATAGCTGCAGGCTCACCTGGGGAAGGATGGCTGCTCTCGGGAAGGTGGAAGGGGCAGGTTGCTTCTTAAAATGTGATATGCATCACTTATACAGTGGGGACATTTGTCTTGCTAGCAGTTAACGGATTCATTGATCGCTACAGCTAATACTGCAGGTGCTTGAAAATAGGATGTACTGTACAGTCAACTCTTAATTATTTCTGCACAATAAATCCACACTGTGGATTAATCCCGCAGAGATGCAGCAGACAGAGATGGCAGAGACAACAGCATCAGGTCTGTGCAGAGCCAGCTCACGTCCAGCCAGGGCCACTTACTCAGCTACTTGCTGTGCCTTCCTCTTCCAGGATCAGCTCAGATCCAGAAGGAACATAATAGCTTTTCTGCAGAGCAGAGTCCTTGTTGGACCTGAGCGTGTCTCTTTGCATTCCTTTTAATGACTGGAGTATGGGGAGCGCTGTGCAGGGACAGCTGGGTGGCAGCAGGGATGAGCACAGAGAGCCTGCATTTCTTCAGCTCCTCTCATATCTTCCCTCCTCTTCACAGATGTACTGTAGAAACAACAGGCATAACCCAATCTCACCCTCAAATTCTTGTGTGTGTGTCTGCATGGGTATAGTCCTGCCTTTGCCTTCACCTTCACCTTCCCAATTACACATGTTCTGCTGCATATCTACACACACTTAGGTGCATGGTTATGGTACATATCCCAAATGTATGCTTATATATACTCATATTTACTCACACACGTACTGCCCCACTCCAGCTAGAGCTGGGAAAGCAATTGCTGGGCAATAGCTTTTTCCAGAAGCCAGCATAGGGCCCTGACTTTTTATATGTTGCCTAGCATTTTGTTTAGTCTAACCTTAAATATTCCAAGAGATAAGGTTTCAGTCTCCTTCCTAGAGGTAATGGTATAGCTTTACACTGGGGCAAATAAGAAGAATGCACCATCCCCATGATGGTGGCTCATCAAACACCTGGGCTAACAAATTGCTTTCTAGTACCAATACAGCTATTCTGATGCCTCTATCTGAACTTTCTACTTGTAGACAAAGGGAAATAAATGGAGGAGAGCAGGAGCTAATGCACGAATTGAAGGCATTTTCCTGCTGAGTTGGACTGACTAGGACAGGTACTCCGGAGGAAGAACTTAATCAGTGTAAAGTAACATTTGTCATCTTCAGACTTAAGGTGGAGGAAAAATGACTTATGGAAACCAACAGTAGCGAGAACATCTTTTGGAAAAGACTGTAGGAGGTGCTCTGTGGGAGAGTAATGTACCAATTTGTTGTCTTGGAGCCGCCATAGGAACCATGCTGCATCCTCAGATGCTGTCACCATCTCATGCTGTGCTGGGGAGCTTGGCTTCAGGCAAGGAGAGAAGATCTGTTCTCTGGGTGCATTACCCTTGGATCTCGGTCTGAGATCATGTGCTCAGTAAGGACTCCAGGCTTCAGGTGCTCGCTTGAGCTTGATGTTTGTTTGGGGGAAGCAGCTGTGGGGCATGCAAGAAATGAGAAATCCATGCAGAAGTCCGAGGAAGCTAGAAACATGTATCAGTGGGCAGTTATTGGCTCCTATTGACATTGCAGTACAGTAAGTAGAGCAGGGAGGAGTCCAGCTGACAGCAGGACTTGCATCAGCATGGCAGCCAGTGGGTGAAAATCCCCTGAAGCTCAGTATTGATTCATGTTATATTTAATTTAGCAACCCAGATTTCCAAGAAGCAAGGCCATGGTATGCCTGGCCTGATGTTGGGCTGTTACTTTCCTTGCCAGAGATGCGCAGATATTTTCCTGCAGCGAGCATCAAGGAGAGCACAAGGCCTTCAAGCCCAGTGCTTTTCACTACCTTTCATGCCCAAAGAGCTGCAAGTCTTGAAGCTAACTGCAAAAAGATACATGGAGACCTGAGTTTCACCCCAGAAGACTTTGGCTTTGCCTTGCAAGGAGATCAGCGAGCCTGCATGGACCGAAGCTGAGTAAGACCACTGACTGTGATCTACCTGGGACAGCCCACTCATCCTGGAGCAGGACTCTGAGGTTTTCCCTGTCCCCATGGTCTGTATGTGCTAAGGAAGATGCACTTCTGTGCTGTACTGACAGGGCTACAGATTGCTTTTTGTTGTGACAATATGGAGAGGGTTCGTGCACCACTTATTCAGGTACCGTGAATAAAACCTAAAAGCTTTTATGATGGTGCTCCAGCCTGCACACAGCCTGGGAGGAAACCTTGATCTTTAAAGGAATTAACTCTCAGACATCAGGAACAGCTGGAGGTAGGCAGGTGAGGCAGGAAGGATCTCCAAAGGCCCAGAGGATGATGGTGAGTTCTCAACTGCCAGGGCTTTGCCAGTATAATGTAGAGAAAAAGGTGGGTTTGGATGTGTTCCCATGCCAGACAGTGCATTTCCACTAGACACACTGGTGGTCTTTTCTCCCTTCCTGTGTGTCCAG
Seq C2 exon
GCCACCGCTTTGAAGACAACCCTGGTGTGAGGAGGCATCTGATGAAGAAACCATCTAGGAGCCAGATCACCAGGACGAGCAAAAAATTAGCATCAACTCCATCAGTTAAGAAAAAGAAGAAGAAGAAGAAGTTGGATAGAAAACCCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.646 A=NA C2=0.902
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]