GgaINT0050305 @ galGal3
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23600186-23600889:-
Coord C1 exon
chr7:23600715-23600889
Coord A exon
chr7:23600283-23600714
Coord C2 exon
chr7:23600186-23600282
Length
432 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTTTTATTCTTCCCTGGCAGAAA
3' ss Score
10.14
Exon sequences
Seq C1 exon
CCACCCAAACGATGAGAAGGAGGGCTTCTTTCCAAGGAACCACTCCAGCTCCAGCATGAATTCTATCGTGGGGAACCACCACCACAACCACACCACAGACACCTGCGTGCCCCTCATGGGAGAGGAACGAATTGAGATGGCTGACCCCAAGGCCCATGAGACCGAGTGCAAAGAG
Seq A exon
GTGAGAGTGATGTGGGGGGCTACCTCTCCTTTTTCCACTCCCCAGGGTCACCCTTTGGCCTGTGACAGCACACAGCGATGCTTGATGCCCACGCTGGGGCCCCTTCACAGGAGGGCTCATCCTTGTAAAGGCTGAGCTTGCCTGGATCACCTGGAACACTAGAAATCAGGTCACTGTATTACGGTTTTGGGACCTAATTTTAGCCTCATGCTTTGTGTGAGTGTCTGCTGGAGTGTGTGATGGCAGCGATGGCCCTGGCATTTGCAGCATGACCTTTCACTATAAGGCTGCCTTACTAGTGAAGCAGGGAGCCAAGCATCTGGTGTGGTCCAAGACAAGCCCAGGTGCCGATGTGCACTGGAGAGCAAGGCTGTGTATGGAAACAAAGGCACAGGGACATGCTTCTTACTCATTTTTATTCTTCCCTGGCAG
Seq C2 exon
AAAAATGTGCATGTCCATAACTCTGAGGGACACCGTAAATATCTGAAGTTGATGGAGAAGATTCCTGAAGATGCAGAGGCCACCGTGGTCCTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(21.8=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCAAACGATGAGAAGGA
R:
CACAAGGACCACGGTGGC
Band lengths:
271-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]