GgaINT0050308 @ galGal3
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23595557-23596318:-
Coord C1 exon
chr7:23596131-23596318
Coord A exon
chr7:23595814-23596130
Coord C2 exon
chr7:23595557-23595813
Length
317 bp
Sequences
Splice sites
5' ss Seq
GAAGGAAGG
5' ss Score
-1.27
3' ss Seq
CCCAAGGGTGGCCCTGAATTCCC
3' ss Score
-19.69
Exon sequences
Seq C1 exon
CATTTCCATGAGGCTGCATACATGGCTGATGACCGTCAAGATCTCCTCAATGCAATCAATGAGTTCTTGGACTGCAGCATTGTCATTCCTCCATCTGAGGTGGAAGGGAAAGACTTACTCAAATCCATTGCCACCTTCCAGAAGTTGCTGCTGAGGAAGAGGAAGGAGAGGGAGCAGAAATCCATGAA
Seq A exon
GGAAGGAGATGTCCAGGAAGCCAAAGGTCTCTCCACTCACATTTGGGCAAAAGAGTTTGTGCCTAGTGCCCTGCGTGCCCCAGTGGGCCCTCCCCTCACAGAGCCTGGCAGAGGGGTGAGCAGGGCCTGGCTCCAGCAGTGGGCAGTGGTGGTGGGGGGCAGAAGGAAGGGGTATAATGGAGGCAGGACAGAGGCTGTAAGCAGCTGGGGGCACCTGGAGGCTGTGGGATGTGCGGTTATGGGAGGCCAGATTAGCATGGCAAGAGGAAGATCTCCATGGGGTATGGAGAAGGGCAGCCCAAGGGTGGCCCTGAATT
Seq C2 exon
CCCTCGCTCAAGCCCTGCCCTCCATGCACCTCCAGAGCTGTGTGAAGTGAAGGCTGAGGAAGAAGAGGAGGAAGCTGAGGATGACCCTTTGAAGAGGACTGGAATATTTTTTGGAGGTCTGGTTCGGGACATAAAGCGCAGGTACCCCAAATACCTCAGTGACATCAGAGACGCCTTGCACAGCCAGTGTCTCGCAGCCGTTCTCTTCATCTACTTTGCTGCTCTCTCTCCTGCCATCACCTTCGGGGGACTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.264
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.5=57.1)
A:
NA
C2:
PF0095516=HCO3_cotransp=PU(28.8=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGCATACATGGCTGATG
R:
AGGCGTCTCTGATGTCACTGA
Band lengths:
354-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]