GgaINT0050408 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38222533-38223742:-
Coord C1 exon
chr7:38223529-38223742
Coord A exon
chr7:38222626-38223528
Coord C2 exon
chr7:38222533-38222625
Length
903 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTCCTTCTTGTTGTAACAGAAA
3' ss Score
9.1
Exon sequences
Seq C1 exon
AAGGGCGTGCAGTGGTGTCTTCTGAAGGAGGAGGAAGTCGTTCCCTGCATCAGAGCTATGGAAGGGCGTAGAGGACGACCACCAAATCCAGACAGGCAGCATTCTAGAGAGGAGTCAAGAATGAGACGTCGCAAAGGCCGACCTCCAAATGTTGGAAGCACTGAATTTCTAGACAGCACTGATGCGAAGCTTTTAAGAAAGCTACAGGCTCAAG
Seq A exon
GTAAGGAGTACTTCACTGCTTTCACGAACACATGAGAGTGTCAGTACATGGAGAGTTAATGTTTTTTCTGAAGAGATGTATTTTAGTAATACACAGCGTTTCATTGTAGAACTTTGTCAAATGCTTTTATTGAAGCCCTTTCCTATTTCACGATCAGTAAATATATGTTAATCAAGTTTGAAAGCTTATTCTTTAATTACTTTAGTTACATAGGTTAAAAAAGCAGACATCCAATGTTTTGGTTGCTCTTGTTGTTTTTATTTTAAATTTGCATAAACAAAAAGATCTCTATGTGGTCTCTGTTACTGGCTCAAACAACGCTGGAACTAGAAATTAGCTTTTTCACCCTCCTTAGAGTCTCATTTTCCACCCTACCCCTACACCATGTTTATGATTGAATGAAAGAAAACTGATTTCAATAGGCAGAGGACAAAGTTGTATGATTTAAGCTGGAGAGAACAGGATTAGGTAATTAATTAAAGTAACAAATAAGGAAAACAGTAATTCCATTATTTCTGTATTAAATGTTGGTCTAGTACTCTGTGACAAGTTCTTCTTTAAAAAGAAAGAAATCACCTTTTAAACAAAGCAGCATTACCAGTCAGATGCTATCTCACACTTCATGGGTAAATTTCTCCTCCAAAAGCAGTGCATTATTTTTGTAGAAACTGTTATATTCTTTTTCTCTTGCATACCTACTTACAGTACGCATATCACTGTGTGTATATATACAGTAGATACCACAGACAGTCATTGGTAGTTGAATGTTTTCAAGATAAAACGTGCAAAAATAAATCAACTGACTTCTGGTTCTTCACTTCATACAAGTGTATGGGAATATGAGTTGTATCTTTATTGTTAGAGAACACTGTTTTTATGAACTTTTCCTTCTTGTTGTAACAG
Seq C2 exon
AAATAGCTAGACAAGCAGCACAAATAAAGCTACTGAGAAAACTCCAGAAGCAGGAACAAGCCCGAGCTGCCAAAGAAGCAAAAAAACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.481
Domain overlap (PFAM):
C1:
PF0142914=MBD=PD(3.8=2.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGCAGTGGTGTCTTCTG
R:
TTTTTGCTTCTTTGGCAGCTCG
Band lengths:
294-1197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]