RnoINT0024816 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46013222-46017019:-
Coord C1 exon
chr3:46016809-46017019
Coord A exon
chr3:46013315-46016808
Coord C2 exon
chr3:46013222-46013314
Length
3494 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GCTTTTTTTTTTTCTTCCAGAAA
3' ss Score
10.88
Exon sequences
Seq C1 exon
GGAATGCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGACGGCCGAAGAGGAAGACCACCCAATCCAGATAGACCAAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCCGAATTCCTAGATAACACAGATGCAAAACTACTAAGGAAACTGCAGGCTCAAG
Seq A exon
GTAGGAAGCACCCCGCTGCCTGTCACTAATGAGAACCCAATACTCATCCTTCTGGTATTCTGACTTGGGAATGGTCGCCAACTTCTCTCAAAGGAAACAGGGAGCCCCACTAGTACGTGGAGGTTTGAATACTAGTAACTCCAGAGCCTTACTTACTGATTCATCCTCTCTGATGCACTGCAGTCGCAAAGCATGCTGTTATGCTGTTAAGAGTTGGACAGAAAGGAATCAACCCACATTTGCTTGGCACATACCCTAAATTTGTGTAGCCTTCCTTCTGCAATAATCCTTTTAACAGCTCCCAACTCCTTGAAGTGTACATTAGAATACATAAAAAAAACATGGATTTCTGCAGTAAATTTGAGTCAGAGAACTCTGGTTACTGATAAGTAACCCCAGATGAAGTCTGGGCATGCATTTTTAGAATGCTCAAATGGTCACTGTATTTTAGAATGTCTGATAAGCACCCCAGAGACTATATATACTAACTTAAATTTTCCCAAGGTGATTAGAATGTACTTCTTATTCAGTATTATACTTACATTACCCTGGAGCTGTTCCTGTGGACAGGAAGCCCAAGCTGGGCTTGCCGCTATGGGGTCTGAGTTATTTTGTATAAAGGCAAAGTCTCTTTGGGCTGTCCTAAGCTTTTCCTCTTGTGTAAGTGTCTTGAACATGTAAATATATACATGTACAGAAAAATTATGGCTTAAATTTTTAATAGTTAAAATTATTTAAATGTCTATCAGAATTTTATGTCATTACAAGAATTGTTTATGTCTATAATAACAAAATCTAGAAAAATACATGATGTATTTTTGTTCATTGTAAACATCTCATAACCCATGGAAAAGGCTCACAAAACAATTTACTTTAAAAGAAAGCTTTCACTCTCATTCACCATCTTTCTAGAAATGTATGCAAACATCAGCATTTACCCTTCAGTGTTTCTTTTTTTTTTTTTTTTTTTCTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTCGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCCCTTCAGTGTTTCTAAAAGGTTCTTCCGATTCATGCTCACCTAATAGCGCTTACGTTAACTACTGGCTAGCATCTCAGGTCGCAAAGCTTTATTCTTTCTCTGCTTTAACACAGTCCATTTTTTAATGTTATTTTATCTTAAGACATTCATCTTCCTAGTAAAAGAAAGGCCGTAGTATATTAAAAGGCAAGCATGAGTTAAAAACTAAAATTTTAAAAATTGTATTTTCAGTTATGATTTCTCTCTGTGTATGTGCATACATGTGTGTATATACATGTTTGACTGTGTGCATACAACAGCACATGTGTGAGTCAGAGGACAATTTGCTTGAGTCAGTTTTCTCCTTCTTCCAACTAGACCTTGTGGATCAAACCCAGATCGTCATTCTGGGTAGGATGTGCCTTCGCACACTCAGCCAATTGCCGGTCCTGAGTTTTAATGTCACTATCACTAAGCCATCACTCTTATGAAGCCTGTGTAATGCTAGCCTTGTTATATTTCAAAAATGAGTGCTTGGAGTTAATTGCTAGACAAAATGTTAATTTTCTTATGTTTTCATTTCTAATAAAAGTATCCTCATGTACACTCAAAAATAGAACATTTAAATTTGAAAAAAATCAGGTGTATTGTAACAAAGAACTTAATTGTATTTTATTCTCCTAGATTTCAAATTGATTTTATTCCATGACTTACTTTCCTCTTGTTAATGGGCTTCACTTCTCTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCGTTACATGAAAACAATCATGCATGCAATGCTTTCTTTTTGTAAGCATGTATGTATAAGGGGAGTGGAAGGGGAGCACATGTGTCCCCACACATTGTGAAGGTCACAGGACAGATGTCAGGAATAGGTTCTCTCCTTTCCGTGTGGGTTCACACGATCAAACTCAGGTTGTCAGGCTCGGTGATAGCAGTCCTGATCCTCTGAGCATCTCCTGCCACAAGCATTCAACAATAAACAGTCGCTACCTTTGGGCTAGCAAGATTGTGCAGTGGGTAAACTACTTCCTGTACAGCCTTGTGGTCTGAGTTCTGTCCTGGGATCCCCATGTCAAGGTAGAAGTAGTGAAATGCGTGTCCCCAAGTTGTCCTCTGACTTGTACATGCCTGCCATGGCCTGCCCACATACATACATCAAACACTTGTGCACTGTAATAAAAAGGTAAAGAACATTGTTTAGATTTACAAATATATGAATTGTTTTATGTTCCTTTTTGTTGAAATTTAAGCAGCAGTGAATAATTTTACACTATTTCAAACAGTTTAAAGGGGTTATTTGAGAGAATTCTAGAAGTTTCTGTTACATATTACCACCCTACTTGGATTAAAGTGTCTGGAAGAATTTGATTAAAGTCACAGATTAGTTGAGAATGCGGGAAATGCAAGCTTTCACTGTATTTCCAAGTGTTGTAAACTGAGATGCAGACTTAGATCTACACTTTGGACGATAGTAGCTTTGGGCGCATGCACTGCTTGTTGATGGACCACACCTTAGCAGCCATGTGCAGTTGAAAGTGGCTTCTGTCACTGGCTGTCACAGTGTTGCATGTATTCATTGAGTAAAATTATTGGATTTATTATGAAAGTTTCAGAGTTTATGGAGTGCAAGCTTCAACCTATGGAGCTTTATTGGGAAACTTTTTAAAAATAATTTATTCGTTTTTATTTTATGAGCATTGGTTTTTGCCTGCATGTATGCCTGTGTGAGGGTGTCAGATTCCTTGGAACTGAAGTTGGATAGTTGTGAACTGTCGTATGGGTCCTCCGCTGAAAGAGTAGACAGTGTTCTTAACCATGAGCTGCCTCCCCAGTTCCAGGAAACTGCTTTCTGATTACATGTGCTTTTCAACTTAAGACCAAGTTGAGTCTTTATCTGCAATTCAGAAAAAAACAAAGCCATTCCGTTAAAAATTAAATATTGAAATGTATTTGTCTTGCATTTTTATGACACTCTGACTGCGTTTTGCTCGCCATGGTCTCTTTCTCTATGTGTCAGATTAGAGGTGTTTATTTCTAAGGTATTTATACTACAGCAGCTCTTTTGTATGACTCGGAGAGTTTGAATGCCTATGCTTTCCAAATGCTGAACCTTATTGGGAGCTCGAAGTGTATTTTAGCGTCCTCTGTTTTATCTTCTAATAGCACCTAGAGTTTGCTCCATAAAATTAGACTCTGCTGTGTCTACTTCCCCTGGAAGCTGGGTCTTTCTACGAGCAGAATGAGTACGCCCTTTTCTACCAAGCCATCCCCTACCTAGTAAATTACCTGCCCTGCGTTAAGAACTGCCCCTTCATAGAGGTGCAACCACAGCCCACAGTTGCGCTTGGAGTTGTCAGGAATACCATTTGAATTTTGGTTTTGCTTTTTTTTTTTCTTCCAG
Seq C2 exon
AAATAGCCAGACAGGCAGCACAAATAAAACTTCTGAGAAAACTTCAAAAGCAGGAACAGGCACGGGTTGCCAAAGAAGCTAAAAAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.620 A=NA C2=0.406
Domain overlap (PFAM):
C1:
PF0142914=MBD=PD(3.8=2.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]