GgaINT0050592 @ galGal3
Intron Retention
Gene
ENSGALG00000012509 | F1NCH5_CHICK
Description
NA
Coordinates
chr7:36942997-36943917:-
Coord C1 exon
chr7:36943832-36943917
Coord A exon
chr7:36943042-36943831
Coord C2 exon
chr7:36942997-36943041
Length
790 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
GATTGGCTTTTGCCTTTCTGAAT
3' ss Score
0.45
Exon sequences
Seq C1 exon
CTTACTGGTTGTATTTTTATTTCAGAGCACAAAGTAATCATTGTTGGTCTGGATAATGCAGGAAAAACTACCATTCTTTATCAATT
Seq A exon
GTAAGTATGAGCTGCCAGTGATGTTTCATGTGTTTTGAGGTGTGTGTTGTGTGCACTGCTTTGGCTTGTTTTGACTCCTTTCTTTTTACTTGGAGATCACTGTGGAAATTATGGGATAGGTGGCGCTGGGTCAGAGCGTGTGTTCAGAGTTCAGAAATGTCTGTGTTCTGCCTGATGTGTGAGTAAGGTTTTGTTGAGAACTTCTGTTTATCAAATTACATTTCTATTACACTTGATCACAGCTGCCTTTGGTGTCACAGCACAGGTTGTCTGCCAGCTCCATAAAATAGGGTTACACTGAGGGTTAGCCACAGCATAATGCTGCTGTGCTGGTCAGCATGTAACTGACATCGTTTGTGAGCTGCAAAGCACCAAAGCCTGACCTCTCCCTGCCTCAGGTTGTGTCCTGCCCACCTTGATGGCACAGGGAGGGCAGAGCACAGGGCCATGCAGCCAGGTTTGAGCCACCAGCAAGCTTTGAAGCATTGTTTGCTGTTGAGCTGTTTCTGGCTTGTATTTGTCGTACCTCAGCCTTGCTGCTGATTTCCATGGAACCAGCATGGGCTCCGTATCGCTGGTCCTCCGCGCAACTTTGATAAAAGGCTGCAGATCTGTGCCTGGGCTCGGAACCTGCAAGTGGGACAGGCAGCTCAAGGCCTCTCTATAGCAGGAGCAGATTGGCCTTCTCTCACAGCAGTGCTAGGAAGCACTCCTGCTCCAACCCTAAACTTAAAATGTTGCGCGGGTGAATATTTCTTTTGACAAACCATGATTGGCTTTTGCCTTTCTG
Seq C2 exon
AATTTTAAAGGTTAACAGTGTTTCCAGCCGTGTGCAAGCTGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012509:ENSGALT00000020434:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(14.8=86.2)
A:
NA
C2:
PF0002516=Arf=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]