HsaINT1047968 @ hg38
Intron Retention
Gene
ENSG00000162980 | ARL5A
Description
ADP ribosylation factor like GTPase 5A [Source:HGNC Symbol;Acc:HGNC:696]
Coordinates
chr2:151814169-151815199:-
Coord C1 exon
chr2:151815139-151815199
Coord A exon
chr2:151814317-151815138
Coord C2 exon
chr2:151814169-151814316
Length
822 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
ATATAAACTTTTTTCCCCAGTTC
3' ss Score
7.46
Exon sequences
Seq C1 exon
AGCACAAAGTTATCATTGTTGGGCTGGATAATGCAGGGAAAACTACCATTCTTTACCAATT
Seq A exon
GTAAGTATTAACTATTTTAAAAATTATTTTATTTCTAGTTACTTTTTTGGCCTGGGTGATAGTCGATCAATGAATGCAGTAAGAAATTACATGAAACCTAAGTTACCCTGTAAGAAAGCAGGTTGGCTATAAACCTGGAGCCAGATCTCAGCAATAGTTAGTAGAAAGCAAGAAATTTATATGATATTGAGCATATAGTTGGCATTGAGTTGTCCACTTGTTTTGTGCTAAAGCTCTTTTGTTTGTAGAAAGTAGAAAAATATGGCCGGGTGCGGTGCCTCATGCCTTTATCCCAACACTTTGGGTGGCAGAGGTGGGAGGATCGCTTAAAGCCAGGACTTTGAGAAACCGCTTGGGTCACATAGTGAGATGCCATCTCTTTATAAGATATATATGAATATATATATATTTTAAAATTAGCTGGATGTAGTGGTGCACACCTGTAGTTCCAGCTACTCAGGAGACTGAGGTGGGAAGATTGCTTGATCCTATTCAGGAGGTCAAGGCTGCAGTGAACCTCATGCCACTGATTATGTATGATCACACCACTACACTCCGGCCTGGGTAACATTAAAAAAAAGAAAGTAGAAAACTATAAAGTAGAAACTATAAAGTTTCCTGGAATGACCTAGTATATGCCAGATAGCCTACGACCTAGTTCCAGCCCTGTTTAAACCCTCACTCATGTTGTAAACTAGTGGGAAAAAGATATTTAGGTATAAATTATAAAAGGAGGTCATGCTGATTTGTCCTTGATTAAAAAATTGTTCAAGCAAGTTAGCTTCCTTGCTAATTGTAATGTATATAAACTTTTTTCCCCAG
Seq C2 exon
TTCTATGAATGAAGTTGTACATACATCTCCTACAATAGGAAGTAATGTAGAAGAGATAGTGATTAATAATACACGTTTCCTAATGTGGGATATTGGTGGCCAAGAATCTCTTCGTTCTTCCTGGAACACTTACTATACTAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162980:ENST00000295087:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.6=100)
A:
NA
C2:
PF0002516=Arf=PU(33.8=97.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAAAGTTATCATTGTTGGGC
R:
TGTGTTAGTATAGTAAGTGTTCCAGG
Band lengths:
206-1028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains