BtaINT0021376 @ bosTau6
Intron Retention
Gene
ENSBTAG00000043964 | ARL5B
Description
ADP-ribosylation factor-like 5B [Source:HGNC Symbol;Acc:HGNC:23052]
Coordinates
chr13:20605733-20607845:+
Coord C1 exon
chr13:20605733-20605793
Coord A exon
chr13:20605794-20607697
Coord C2 exon
chr13:20607698-20607845
Length
1904 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TGGTATCTGTCTTTTAACAGCTT
3' ss Score
9.51
Exon sequences
Seq C1 exon
AACACAAAGTAATTATAGTGGGACTGGATAACGCAGGGAAAACCACCATTCTTTATCAATT
Seq A exon
GTAAGTATGGGTGTTTAATTAAACAGTTTTTATTTTCAATATTGGAGCTAATTTTGTATAATTAATAAGAATGAGATGCCATTATAAGGGGAAAACTTAAACATACAGTTTTGTATTTAGCCAAACACAAAATTTATTAAGCAGTTTTTAAGGTAAATTTGCTGTATGTTTGCTACAATGTTCAAAAACACTCATTTTTTTTCCAGCCTTGAAAGAAAGAATTAATATTAAACTAAAAATAACTGAAGCACACATTTCTGTGAGGGAAGGATGGGATAAAGTACATTTTGCTGAGCTCTTCCCTCTCTGAAGTCCATGTGAATAGAATGATATATTGAAGCTATTATTGCTCTCCTGACTAAATAGCTCAGGAATTGTTTAACATACCCAGACTTGTCAAATCAAAAGAAATGAAGATCGCACCTGAAAATACTGCTTTAGCGGCTTGCAACAAGAGGCTCGAGACTTCCAGAGAAATACATTACTACTTTCAGGATATTTTAACAGCCCATCAATCCACTTGTCAGACTGCCTCCCATTATCCTCTCAGTGCCAGTGCAGTGATCCTTGTTAAACAGTGGGAATGGATCTGTGTCCCAGGCATTTTAACAAATAATTATAAAATACAGTGCTCCATTGTATGCTTCTTGTCTCTTCCCGCCTCATCTTAAGTACATCAGCTGACAGGTCTCCAGAAATACTTCACTTAAGCAATGCTTAATGTTTTTTTTTCAGCTGCTTTGCTGAAAAGCTACCAACTTATGGCTTGTTGTTTCAGAGTTGAATAACTACTTGTTTTTCTTTAAAACATTCATCCATTGGTCGTTATGTAATTTACTATGCCTTAGCCTTTGGACTTTAGAAATAAACATTTCAGAAACCTGTCATCATTGTTGAAGTAATTTTGCATATAGCTTCAAAAATACATACATTAAACCCAAGGGAGAATTACAAGCTTCTTCCAACATAGTACTGACATATTATAGGCAGATAAATTTTGTTGAATTAATTGATTAATATAGCCTAACTGATGATTATGATAATACACGTGATATGAGCATCATTGTATTTTCATTTGCCCATCGACTGTAGTTTTGGTTAATAGACATCTAGTAATCTTTATGGTTAAGCCAAGTGTTAGCTTTCTCATGTAGACAGTCTTTAAAATGATCTCAAGCCCGTGTAGCTCAGTTGGTAAAGAATCTGTCCACAATGCAGGAGACCCGGGTTTGATCCCTGGGTGGGTAAGATCCCCTGCAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGCAGCCTGCCAGACTACAATCTGTGGGGTCGCAAGAGTCAGACATGACTTAGTGACTAAACAACCGCCATACTCGAGCCCAGAACAGGATGGCATATCGACTGTAGTTTTAGTTAATAGACATCCAGTAATCTTTATGGCTGAACCAAGTGTCAGTTTTCTCACGTAGACAGTTTTTAAAAAGTGATAGCCTACTTACTATTCATTGGTTACTACTTTACAAGTATAGATGACACAGTCACCTAGAAATTTGCTCTTTCAGCGTAGGGGATTGGTTCTGCTCTAACTGATAAGAGGACATGGGACTATTGGAATTCTGGCCACAAAAATGCCCTCTCACTCCACACAGTTCTGTCCAGATCAAGCCTGTAGTTTATTCTATTAAAAGAACCAAAAAGCATTCCTTCAGTTGTTGTTTGTCTAGGTATTTGTTTGCACAAATGTTCTGCAAGGTTGAACAGTGATTTTGTTGCTAGTGATTACCATCATTGGTGCAAGTAAAAAAGGTTGATTCATATGAAAATACAGAGATAACAGTTGCTTTGGGTTCTCAAGATTTACAAGAGTTTTTATGGTATCTGTCTTTTAACAG
Seq C2 exon
CTTAATGAATGAAGTGGTTCATACATCTCCAACCATAGGAAGCAATGTTGAAGAAATAGTTGTGAAGAACACTCATTTTCTTATGTGGGATATTGGTGGTCAAGAGTCACTTCGATCATCCTGGAACACGTATTACTCAAATACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043964:ENSBTAT00000061579:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(32.8=100),PF0231712=Octopine_DH=PU(5.9=33.3)
A:
NA
C2:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.9=56.0),PF0231712=Octopine_DH=FE(41.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAAGTAATTATAGTGGGACTGG
R:
TGAGTAATACGTGTTCCAGGATGA
Band lengths:
199-2103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development