DreINT0033282 @ danRer10
Intron Retention
Gene
ENSDARG00000094709 | arl8
Description
ADP-ribosylation factor-like 8 [Source:ZFIN;Acc:ZDB-GENE-030131-5762]
Coordinates
chr7:41440191-41441998:-
Coord C1 exon
chr7:41441938-41441998
Coord A exon
chr7:41440339-41441937
Coord C2 exon
chr7:41440191-41440338
Length
1599 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
GAAGCTGTTTTGTTGTGCAGTTT
3' ss Score
4.69
Exon sequences
Seq C1 exon
AACACAAGGTGATTATTGTGGGATTGGACAACGCTGGGAAAACAACTATACTTTATCAGTT
Seq A exon
GTAAGTAAAGTAATATTTTATTTACTTTAGGGATTGTTTGTTTAAAAACATTTTAAAATTACTGACATTGAACAAGTTTTATTATACTTTCAATTGCTTTTCACTCTTAATTATTTTTCTAAAAAAATAATTTATACGTTGTTTGCTATGGCGGATTTCATCTTCAGGTTTAAATAGTGCATTTATAAACGCAGCAATAAGAGTAATATTAACATTCTGTAAAATAAATTGTACAACTCATTATTTCTTCATAAGGTTGTAACGCAGTAAATAATATTAATGTATTGAATTAAGACTCTTTTAATAGTAAAGTGAAGTGTTTAGTGTATATCAGGGCTGCACGATATTGAAAAAATCGGATATTGTGATATTTTATTTTTCTGCGATATATATAAATATATATTGAACACAGCTTCACAAGATGCTTGAATAGCTCTATTTGGCAGTTTTTTGGGGAGTCTTAACAGTGTTTAGGTACAGAAATTGAAAAAAACTAAATTATTTTCTTACTTTGCTTTGTCTCATTTCTAGTCCAAATATCTAAATGCCTAGATCACATAAAAATATTGTTTTGTTTTCAGCTTCAAAAGAAATAAGTCAGAATTAAGTTTTTTTTTTCTTTAAATCAAAGCAAAATTGTCTGTCAGTGGCATGAGTAAAATAATCTTATTTTCACTGAAGACTAGGAGTAGAAACAAGACAAACTTTTTTGATAAATCGTGTAAATACAATTAATCTTTGTTACACCTCAAAACATCATTTTTTGGACATTTTTACATTCTTTTAAAATTCTCAGTCAAAGGCCTTTAAAACACATGCTAATGAAACATTTTTATGGGTAAACTTTGCAGGTCTAGAAATCAGATGTGTTCTGTTGCTTCTGGTCAACTACAATTCAAACTTAACATTGCAGATCTTGCGATGTGACTATTGTGGATGTGCACATTGTGATATCGATGCTGAAATGATATATTGAGCAGCACTAGTGTATAATCCAAGTGTGCATGACTCTGACTGATGTGGCATCTTCATTCCTTAACAATAAATTAGAACTAAACATGCATTTAATAATATATTTTATTTTCGATTAAGTTGAATAATTTAAGCATAATTAGTTGCTTTACATGTGTACGAATGACTTTTTCTCATTTCTCTTTTGACACATTCATTTCTCCTCAGTGCATTTTTGCTGTTATTTCTTAACATCCACAAAATGTCTCCATTCATCTGCGAATTTGATATTACAAAACTGAACCTGATTCTGGAGAAATGCTTAAATATCTGGAAAACTGACTATTCATCAGTCTCAGCTTTTAAATATTTATTTTTCACTTTTATTACAGTTCAATTCATAGACAAAAAAAATGAAGGACTCTATGCAGCTTCATACCTGGACCTGATTGTTTCGTTGTAAATAGCCATTGTCATTTAAATAGTCAAGACACATCTATGGGCTTTTTTTATTAAGCTGAATAATGTGCAGCACAACAACACAATATATTTAAATATTGTGTGCACAGATATGTAAACAAGGTTTTTGTGTGGTAATTAATCAAAATCACTGCAGAATGTTTTATCTGAAGCTGTTTTGTTGTGCAG
Seq C2 exon
TTTAATGAATGAGGTGGTGCACACATCTCCTACGATTGGCAGCAATGTGGAAGAAATAGTGGTGAAGAAAACCCACTTCCTGATGTGGGATATTGGTGGTCAAGAGAGTCTCCGCTCTTCCTGGAACACATACTACTCCAACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094709:ENSDART00000099121:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(33.3=100)
A:
NA
C2:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.0=54.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGTGATTATTGTGGGATTGGA
R:
CTCAGTGTTGGAGTAGTATGTGTTCC
Band lengths:
206-1805
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]