GgaINT0096763 @ galGal4
Intron Retention
Gene
ENSGALG00000008557 | ARL5B
Description
ADP-ribosylation factor-like 5B [Source:RefSeq peptide;Acc:NP_001137441]
Coordinates
chr2:18968609-18970089:-
Coord C1 exon
chr2:18970029-18970089
Coord A exon
chr2:18968757-18970028
Coord C2 exon
chr2:18968609-18968756
Length
1272 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
CGTGCTATTTTTTCCTTTAGCTT
3' ss Score
9.37
Exon sequences
Seq C1 exon
AGCATAAAGTAATCATAGTGGGGCTTGATAATGCTGGAAAGACGACCATCCTTTACCAGTT
Seq A exon
GTAAGTATGCAAACTATTGGTGGGCAGTATTGGTGGTAGATGGACCAACCTTAATGATTCTATCATTCTAATTTGTTATTCCACTTGCATTTTAGCATTTGTCACTAATTTAATCATTGAAGAAAGATTCAGTTTCGCAACCTAGCAGAATCCCTAGGGATGTGCTAAATCACAGTTTCTGCATGAATGGTATTAGTTGTTCTAAACATGCTTAGTTTTAGTATTGGCGTGCAAAGTGAAGGAACTACTTGTATACGCAGTTTTCATAATTGTTTACAAGCATATAATGACCTGTGAATTCTCTTGCTGTCAAAACCTGTTATTACTAAGAACTGAAAAAATCCTGTGCCCAAGAAATGCAGAGAACTTGATTTTTAAATTAATGAGAATTGTAGAGACCCTGCATAATCCATAAATGTTTCCAAATGTTTCCTGATTGCGGTGTCTAAGACTTGAGATGGAACATTTCCTAATAGTAGTATTTTATCTCGCTTGGGAACTACCATAAACTTTTTCAATAGCATTGTTGCATTGTGTTTTATCATTCCCAAATCTTGCTAGCATTGCAGTCATATCTGTGGTAAATTCAAGTGTATTGACAGGAACCTGGTTACTGTTTTCCTTGTGGAGAAGGGAAAGTGCATAATGAATTGGTTATCTGTATGTTTAAATACGAAGGCAGCAGAGGATACCTTTTTTAAAAAAAAAATAATAAATAAAGTACTTCTTAAGTACTTTGTCAAAGCTTGAAGATAGGACTGAGAAATTTTCAGCTAAGAAACCAGGGGATCCTGGTGTGATTTGGTCTGAAGTCAGGTAGTGAAGCTGAGTACTCTGATTACATTGTATTTTGATTTGTATTTTGCACAATTGAATGTTCTTTTTATTTGTGATCTTCAGAATCACAACTTCTTTTGAAGCTCATGCATTTTAGGAATCTGGAAGTGTCTTTTAAGAGAGCAGTGTTACACTGCAGAAGTTATCTGCATTTATTATAAGGCTTTTAACATGCTTACTTTTCGTTGCTGGTATCTGTAGTGTGATACAAGAACAGGACAAGAATTTTGTCAACCGTAGTTGCCAAACTAAATTCACATTAAACTAATCCTTTTACTTCATTACCTTAAGAATGTGAATGTGTAACTTGGAAAATGCCTACTGTTTTAACTTCTTAACTGAAGCTAGAAATGCCTCTGCAACAAATTTTTTGTCATTGACAAGTCTTGTGAATTTTATTGACTGGTCTTTATGACGTGCTATTTTTTCCTTTAG
Seq C2 exon
CTTAATGAATGAAGTGGTTCATACTTCTCCAACCATAGGAAGCAATGTAGAAGAAATAGTGGTGAAAAACACCCATTTCTTAATGTGGGATATCGGAGGACAAGAATCGTTACGGTCATCATGGAATACCTACTATTCAAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008557:ENSGALT00000013939:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(32.8=100)
A:
NA
C2:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.9=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATAAAGTAATCATAGTGGGGCT
R:
TCTGTGTTTGAATAGTAGGTATTCCA
Band lengths:
208-1480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]