GgaINT0096763 @ galGal3
Intron Retention
Gene
ENSGALG00000008557 | E1BQL0_CHICK
Description
NA
Coordinates
chr2:19013935-19015415:-
Coord C1 exon
chr2:19015355-19015415
Coord A exon
chr2:19014083-19015354
Coord C2 exon
chr2:19013935-19014082
Length
1272 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
CGTGCTATTTTTTCCTTTAGCTT
3' ss Score
9.37
Exon sequences
Seq C1 exon
AGCATAAAGTAATCATAGTGGGGCTTGATAATGCTGGAAAGACGACCATCCTTTACCAGTT
Seq A exon
GTAAGTATGCAAACTATTGGTGGGCAGTATTGGTGGTAGATGGACCAACCTTAATGATTCTATCATTCTAATTTGTTATTCCACTTGCATTTTAGCATTTGTCACTAATTTAATCATTGAAGAAAGATTCAGTTTCGCAACCTAGCAGAATCCCTAGGGATGTGCTAAATCACAGTTTCTGCATGAATGGTATTAGTTGTTCTAAACATGCTTAGTTTTAGTATTGGCGTGCAAAGTGAAGGAACTACTTGTATACGCAGTTTTCATAATTGTTTACAAGCATATAATGACCTGTGAATTCTCTTGCTGTCAAAACCTGTTATTACTAAGAACTGAAAAAATCCTGTGCCCAAGAAATGCAGAGAACTTGATTTTTAAATTAATGAGAATTGTAGAGACCCTGCATAATCCATAAATGTTTCCAAATGTTTCCTGATTGCGGTGTCTAAGACTTGAGATGGAACATTTCCTAATAGTAGTATTTTATCTCGCTTGGGAACTACCATAAACTTTTTCAATAGCATTGTTGCATTGTGTTTTATCATTCCCAAATCTTGCTAGCATTGCAGTCATATCTGTGGTAAATTCAAGTGTATTGACAGGAACCTGGTTACTGTTTTCCTTGTGGAGAAGGGAAAGTGCATAATGAATTGGTTATCTGTATGTTTAAATACGAAGGCAGCAGAGGATACCTTTTTTAAAAAAAAAATAATAAATAAAGTACTTCTTAAGTACTTTGTCAAAGCTTGAAGATAGGACTGAGAAATTTTCAGCTAAGAAACCAGGGGATCCTGGTGTGATTTGGTCTGAAGTCAGGTAGTGAAGCTGAGTACTCTGATTACATTGTATTTTGATTTGTATTTTGCACAATTGAATGTTCTTTTTATTTGTGATCTTCAGAATCACAACTTCTTTTGAAGCTCATGCATTTTAGGAATCTGGAAGTGTCTTTTAAGAGAGCAGTGTTACACTGCAGAAGTTATCTGCATTTATTATAAGGCTTTTAACATGCTTACTTTTCGTTGCTGGTATCTGTAGTGTGATACAAGAACAGGACAAGAATTTTGTCAACCGTAGTTGCCAAACTAAATTCACATTAAACTAATCCTTTTACTTCATTACCTTAAGAATGTGAATGTGTAACTTGGAAAATGCCTACTGTTTTAACTTCTTAACTGAAGCTAGAAATGCCTCTGCAACAAATTTTTTGTCATTGACAAGTCTTGTGAATTTTATTGACTGGTCTTTATGACGTGCTATTTTTTCCTTTAG
Seq C2 exon
CTTAATGAATGAAGTGGTTCATACTTCTCCAACCATAGGAAGCAATGTAGAAGAAATAGTGGTGAAAAACACCCATTTCTTAATGTGGGATATCGGAGGACAAGAATCGTTACGGTCATCATGGAATACCTACTATTCAAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008557:ENSGALT00000013939:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=FE(32.8=100),PF0002516=Arf=FE(11.4=100)
A:
NA
C2:
PF128032=G-7-MTase=PD(45.9=56.0),PF0002516=Arf=FE(27.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATAAAGTAATCATAGTGGGGCT
R:
TCTGTGTTTGAATAGTAGGTATTCCA
Band lengths:
208-1480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]