GgaINT0050754 @ galGal3
Intron Retention
Gene
ENSGALG00000009589 | Q9YI58_CHICK
Description
NA
Coordinates
chr7:19685904-19687479:-
Coord C1 exon
chr7:19687256-19687479
Coord A exon
chr7:19686054-19687255
Coord C2 exon
chr7:19685904-19686053
Length
1202 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CCTTCCTTCCTTCCTTCCAGTAA
3' ss Score
10.74
Exon sequences
Seq C1 exon
CTCTGTGACTCATGCCTGCGTCGAAGTAGCTCAGCCGGCGATTCACGCTTTTAAAAAAGCAAATCCGAGTACTTCTGGAAAAAAAGGTCAGCTCGCATTAAATTCCGCCGCGCGATTGGTATTCCGACGTCGTTTCTGGCGGACTTTATAAGCGGCTGGACGCTCCCGGTTGGAGTCGCGCTGCTGCCTGGGCTCCGGTAGCACGGCGGTCCGCTCGCCCCTCG
Seq A exon
GTAAGTCTCCGCTCATCCGCTTCCTATTTCCAAAGCTTTGAGAGCAGCTTTCAGGATCCAGAGCTTTTGTTTCTCTTAAATTTGGTTTTGATCGCTGTCGTGGCTGCACGGGGATAACGGGTATTTCGAGACAGCCAGCGCCTTACACATCGCGTTAACCTGTTACTTCGCTTCTAGGCATTGTCTGGAGAATCGCTTCTCCTTTACGATCGTTTTCTTTTTCATCTTAAAAAAGCGAAATACCCGTTTAACATTGAAATAATCGATGCGTTGCGTTTACACGGGGACGTAAATCCGCCCAACAATGGCAACGAACCGTTAGCTACAGACGTGAAACCAGCAGCTAACAAAGAAAGCGCCCGTTCGTTACCGCGACCTTCATTTTCTTTACAAGGGGAATAAAATAAATCGCAGGTAGCTTCGGCGACAAAAGGACGAGCGGGCACTGACCCGGCCATTCTCTGCCGACACCCGGGTGCCGGCGGGAGGAGGAAGGAGCACATCTGGTGGGATCGGGGCCGGTCTGCTTCCCCCGGCCGCCTCGCACCATCAGCGCCGGCAGCTTTCATGGCAAAGCGGGCCGTGCTGGAGCGTGCCTTGCCCCTGATTTGCCGAAACGTGTGTGTGCCAACACATACGTGCATGACGCGTGTCGTTGGGCTTGGGCAAAAATGCACCTTTGTTGTGGCGGGGGTTTAGCGGTAGGACGCTCAGCCTGGCGTGTGTTTCGGGGATTGGCTGATAAGGCACGGCAATGGGCTCCGGTTGGGATTGTAGGTCATCATCGGGGCCGGGGCATCATTTCGAAGCCCGCTCCGCACATTGGCTTCCCTTTGACGCGAGCCACCTCACCGCCCTGCTCAGCGGCCACCGATACCATTGCGATAGACTTCACGGTCTGCTAAACCCGTCATTCCGGCGCAGGGGTAGCGCCTCGGCATCCAGCGAGGGGACGCGGCTGCTCCTCAGCCTCTCGAGGCATCTGCCCGGCGTGACGCTCAGCGCGTCGGCCCCGGAGCGGCCGCCTCCGCGCCCGGCAGCGGAGGTGCCCACTCGGCCCGGGAGCCCGACCTGTCCTGGGACCCGCTCTGCTCACCGGGGGCCGCCGCCTCCCACCCGCCGGCATCCACGCCCCCCCGCGCGGTCCTCCAGAAGAGCGGGCTACTAAACGCGCCTTCTATCCCTTCCTTCCTTCCTTCCAG
Seq C2 exon
TAAATTCCTCGCTGCCCACTCGCCCTCGGAGGAATATCGAAGGAAAGGCGAACTCCGAGCGCTGGGGCTCTTTTGAAGGGATGGCTTCCTCCGCTCCCTCGTCCTCCAACGACGCTCCGGACCCCGCCCCGACCAATTTACGACCCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009589:ENSGALT00000015628:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.833
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTCGAAGTAGCTCAGC
R:
GTGGGTCGTAAATTGGTCGGG
Band lengths:
357-1559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]