MmuINT0067111 @ mm10
Intron Retention
Gene
ENSMUSG00000070880 | Gad1
Description
glutamate decarboxylase 1 [Source:MGI Symbol;Acc:MGI:95632]
Coordinates
chr2:70562042-70563910:+
Coord C1 exon
chr2:70562042-70562332
Coord A exon
chr2:70562333-70563767
Coord C2 exon
chr2:70563768-70563910
Length
1435 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GCTCTCCCTTCTGTTTGCAGCCT
3' ss Score
10.25
Exon sequences
Seq C1 exon
CAGCGCTCCGCGGACGAGCTGCCCCCGCGAGCAACGGCCTCGTGATTCCCCCCGCCGAGCGGGTCCCCGCCTCCCCACTCCGCCCCCGCCTCCCCCAAGCCCAGCGGCCGCCTCTCCGGATCTCTCCCTTCTTCAGGCTCTCCCGTGCCGGACCAGGGATCGTGCAAGCAAGGAAGCAGCCCTGGGGTGACACCCAGCACGTACTCCTGTGACAGAGCCGAGCCCAGCCCAGCCCCGGGACGCTTCGCAGAGGAGTCGCGGGAGGGTCCAGCTCGCTGTCGCTGAACCGAG
Seq A exon
GTGGGTAAATACCGGATCGCCCGGACTTGCCAGAGCCCCGCCTCGGTTATTCAACCCGGTGCCCTCAGCCTGCGGCTTCTTGTCCAGCCCTTTGCCTCACCCCACCAGCACGCGCCTGTCGCCCACCTTCCACAGCCGAGTGCTTCCCGCCAGTCCTGTCGCAGCTGTGGTTTGGCGCACCCATCCCCTACCCTCCTCGCTCTTGAAACCCTTATCAATTTCATTCGGGAGGACACATAAGGGCTGAAGTGACCCCAGAGCCATTTTTTGCCTGCGCTTGGGGGATCGGAGCTCACGGCTGTCGGATACGCGCCTGGGTAGCAGCGGCAGAAGGTGCGAGGAGCGATAACCTGTTACTTCCCCAGCACCCGCGTCCCACCGCCGCCCGCGGAGCTGCGAGAGCGCGCGGAGGTTGCGGGGGGGGGGGGGGACAGATGCTCGGCCCGAGGGACGACACGCAAAAGGCGGCTGGTGGGCTGCGCTCTGCGGGGTCTTAGATTTACCCAGATTACCGTTCTCCTCCCTCTCCTCTCATTCTTTCGCCCGCTCCTTCTCCCCATCTCTTCCTCTTCTCTCGCCCTCTCTCCCTCACTCTGTCCACGAACAAACACCAAATAGGGGAACCGCGCACTCTTCTATCCGAGGTCTCTTGCGCCCTAGGCGCAAATTCGCCACCGGGTGACGGTCTCCTTTTTACCCTCTGCCACCTTCTCTGGCTCAGTGAAACGAACTCTGGGGACTAGGTAGAGTAGAAACAGTGAATCTGGGACGGAGCCTCGCTCTAGGGTTGAGAAAGCTAGAAACGAGGTGGGACAAGAAACTGATCAGCAAGGCTTCGACACGCTGCCTTTTGGCTGTCTGGAGTGCAAGGTGACTGATTCTTAGCGGGTCAAGTCCTGAGGGGCGGAGGACCTATTTCTTCTCACCTTGTCTCACCAAAGTCCCTGTCCCCGGCGCTGTGAGCCTCCTTCTTTCCAAGGAATTGGCCAGACACAACAACGGGAGCCAGACACCGAACCAGACGTGCCCGCCCCGCACGCCCTCCCCCCTCCTCTTCTGCCCGTTCACCAGGCTGCTGGGAGCCCAATGGGGCTTGTCTCGGCTGGGCTGGAATTTGCTCGATGAGTGCTCCCTAGTGCTCCTGGCCCTATCCTCACCCCATCCCTCGCGTCCTGCACCCGCCTCCGGCGCCCCTTAGCTGTGAGCCTCACTCGGAGCACCCCGTTGCGCCTCTAGACTTGAGAGTCGCCCGGGGCTACTGTGCTTGCGCCCCAGTCCCAGAGCTAGCGAGCGCCTCCCCACCCCCTCCCACCGACCGCGCACCAGGACCCAGCCAGCTCGCTGCCCTTGGTCTCCCTTCTGTCTCCGAGACTTCGGTGCCCCGGGCCGCAGGACCTAGAAGCTCTCCCGGCACAGCTCTCCCTTCTGTTTGCAG
Seq C2 exon
CCTGTTCCTGCGCCCAGTCTGCGGGGGACCCTTGAACCGTAGAGACCCCAAGACCACCGAGCTGATGGCATCTTCCACTCCTTCGCCTGCAACCTCCTCGAACGCGGGAGCGGATCCTAATACTACCAACCTGCGCCCTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070880:ENSMUST00000094934:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.858
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCTCGTGATTCCCCC
R:
CAGGCGAAGGAGTGGAAGATG
Band lengths:
346-1781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types