HsaINT1014120 @ hg38
Intron Retention
Gene
ENSG00000128683 | GAD1
Description
glutamate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:4092]
Coordinates
chr2:170816562-170818673:+
Coord C1 exon
chr2:170816562-170817048
Coord A exon
chr2:170817049-170818528
Coord C2 exon
chr2:170818529-170818673
Length
1480 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GCTCTCGCTTCTCTTTGCAGCCT
3' ss Score
10.08
Exon sequences
Seq C1 exon
GAATTCTTCGTAGGAATTATCTTTTCCCTCCTCTCACCCGACAGCCTGCCTATTTCCAAAGGAAAAAAAAAAAGCGTGTTGAGTACGTTCTGGATTACTCATAAGACCTTTTTTTTTTCCTTCCGGGCGCAAAACCGTGAGCTGGATTTATAATCGCCCTATAAAGCTCCAGAGGCGGTCAGGCACCTGCAGAGGAGCCCCGCCGCTCCGCCGACTAGCTGCCCCCGCGAGCAACGGCCTCGTGATTTCCCCGCCGATCCGGTCCCCGCCTCCCCACTCTGCCCCCGCCTACCCCGGAGCCGTGCAGCCGCCTCTCCGAATCTCTCTCTTCTCCTGGCGCTCGCGTGCGAGAGGGAACTAGCGAGAACGAGGAAGCAGCTGGAGGTGACGCCGGGCAGATTACGCCTGTCAGGGCCGAGCCGAGCGGATCGCTGGGCGCTGTGCAGAGGAAAGGCGGGAGTGCCCGGCTCGCTGTCGCAGAGCCGAG
Seq A exon
GTGGGTAAGCTAGCGACCACCTGGACTTCCCAGCGCCCAACCGTGGCTTTTCAGCCAGGTCCTCTCCTCCCGCGGCTTCTCAACCAACCCCATCCCAGCGCCGGCCACCCAACCTCCCGAAATGAGTGCTTCCTGCCCGCCCTAGTCCCTGCTCTCCACGGGTGCGCTGCGCAGGGACCCCCCCCCCCCCGCCTCCCTCGTCACTCTTCTTATCCCTGCCCTCCGGATTCACGCCCCGGGGAAGCACGGAGGCTGAGGCTCTAGTTGAAGTGGGGCAAGAGCGATTTTCCCTTGAGCTTCCATGCTGCGAGCGCCTGTCCCTCCAAAGGGCGCCTGGGCAGCAGCAGCCGAAGGCGCTACTAGGAACGGTAACCTGTTACTTTTCCAGGGGCCGTAGTCGACCCGCTGCCCGAGTTGCTGTGCGACTGCGCGCGCGGGGCTAGGAGTGAGGTCGGAGGGAGGGTGTGGAGGCGATGGCCGGTGGGCCCTTCTCTGTGGGGTCCTCGATCTACCCAGATTAGCCCGCAATCTCTCTGTCCCGGGGCCTTCGGGCGCCATCGCGCCAGCGCCGAGAGTCGAGCAGGGGCGCCGCGCAAGATCTTTGTCCGCCGCCTCCTGCGCGCTGCGCGCAAGTTCGTTTCCCCGGTGACGTTCCCCATGCTTACTTACCCCACCCTCTCTGGATCTGTACCGCGAGAAATCTGGGGTCCTCAGGGGGCTAGGTAGAGGAGAAACGCTGAAACCGGACCGAAACCTCGCCCTAGGCTTAGCGATGGCTAAAAACCGGCTGGGATAAGAGGGAGGCAAGCAACATTCCGACTCGCTGCTTTCTGGCTGTCTGGAGTGCAAGGTGACTGTGGTTCTTCTCTGGCCAAGTCCGAGGGAGAACGTAAAGATATGGGCCTTTTTCCCCCTCTCACCTTGTCTCACCAAAGTCCCTAGTCCCCGGAGCAGTTAGCCTCTTTCTTTCCAGGGAATTAGCCAGACACAACAACGGGAACCAGACACCGAACCAGACATGCCCGCCCCGTGCGCCCTCCCCCCGCTGGCCCACACGCCGGCTGCTGAGTGCCCAATGGGGCTTGTAGCGGCTCGGCTGGAAAATCGCTCACTGAGCGCTCCCCTGTGCTCCTAGCCTAGTCCCCCACACCCTTGCGTCTTGTACTGGCCTTGGACCCCCACCCCGACCCCGACCCCGCCTCGTCTCGGCGCTTCACTCCAGGTCGCGCCGATGCACCGCCAGACTCGAGAGCGGCCCAGGGCTACGCTCCCTGCGCCCCAGTACCGGAGCTAGCGCGCACGTCTCCTCCGCTGCCCCCACCCCTGCGCACCCCTACCAGGCAGGCTCGCTGCCTTTCCTCCCTCTTGTCTCTCCAGAGCCGGATCTTCAAGGGGAGCCTCCGTGCCCCCGGCTGCTCAGTCCCTCCGGTGTGCAGGACCCCGGAAGTCCTCCCCGCACAGCTCTCGCTTCTCTTTGCAG
Seq C2 exon
CCTGTTTCTGCGCCGGACCAGTCGAGGACTCTGGACAGTAGAGGCCCCGGGACGACCGAGCTGATGGCGTCTTCGACCCCATCTTCGTCCGCAACCTCCTCGAACGCGGGAGCGGACCCCAATACCACTAACCTGCGCCCCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128683:ENST00000358196:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.810
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCACCTGCAGAGGAG
R:
ACTGTCCAGAGTCCTCGACTG
Band lengths:
348-1828
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains