GgaINT0050760 @ galGal3
Intron Retention
Gene
ENSGALG00000009589 | Q9YI58_CHICK
Description
NA
Coordinates
chr7:19672119-19673684:-
Coord C1 exon
chr7:19673572-19673684
Coord A exon
chr7:19672235-19673571
Coord C2 exon
chr7:19672119-19672234
Length
1337 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
ATTCATTTATTCATTCACAGGAG
3' ss Score
6.99
Exon sequences
Seq C1 exon
GTTTACGTATGAAATTGCCCCTGTTTTTGTCCTCATGGAACAAATAACACTTCGAAAGATGAGAGAGATTATTGGATGGTCGAATAAAGATGGCGATGGAATATTCTCACCTG
Seq A exon
GTGGGTTTTTCTCTTGTGCTTGTAGGTTTGACTAAAAGTTAAAATAACCATAAGATCAGTCTGAACATCCACTTTCTGTGTGAAATGTCTGCAAGACCAAACAACATGTCAGAGATTCAGAAGTAGGAGTTTCCCACCTGAAGTATATGCATTGTTCAGGCATCCCACAAATAAGGAAAAAAGAGATTTTTATTTTCGAGTATGTCTGTGTATCATGGCTACATAGAACACTGGCTAACATCTGTAAAGCTTGATAACAAATTCTGGAACATGGTTAGGCATTTAAACACCCTTTGTTGTGCCTTATTTCTCGAGGTGCTGACCTCCAGAACCATGTCCTGCTATTGAGAAAGAGACTACACGTAACTTTCAGAAAATCAGCTGGATTCCCAAAGTATGGTTCTGAAGTACAGGCCATAGTTGCCTTCCTGTGAAGGTGGTATAAAAGCAATCAGCAGTTGTAGATAAGAATGGGAAAACATGCGGAAGGCCTGGGTCCATGTCTGAACAACAGGTGCCCAACAGTACTCCAGGTTTCTGGGTTTGTTGGTATGGGGAAGACCATCCTGTTTCAGAGGATGAAGGACCAATTCTGCCTCCTCTTGGAACAGCCTGCATAAAATCCAGGAAAGCACTCTGGCTTGATTTCTAGTCCCATATGCGAGAAAATTTTTGCCCAGTGTTCTGGTTGATGAAGAAATAGAAGTGGAATAAATACTCCTAAGCTCTATAGATGAGATTCTTCTTACTAAATCTTGACATCTGCATTGTACAACTAGGCTAGCTGCACTGGGCTTTTTGTAGAATAAAAGAAAGAGAAAAAGATGGTTTTTTTTCTCAACTCACATTCCTCAGAAGTATCAAAATATACTAGCTGGATCAGCCTGCAAAGTGCCTCTTTAAACTCGCTATGAAGGTAGCTTAGGATTACTACCTTAGCTGGAGAAATTTACCTTTTAGGCATCTGGTTCTGTATTTACAGATGAGATGGGATAAATCTATACTGTATATGACTTTAGCCTCGAGAGAATTTGATAACTTCCCATTTTTCTTACTAACAAGAAGCTGTCCTGCAAAAACCAGCACAATGAAAACTGATTATTTTAGGAAAGTGTTACAAAATATTAGCAATTGAAAGAGATGATAGGTTAGGCTGTTGGTATAACTTTCTAGAGCATCTGTTCTTGTGCTACTTAGACAGACGCCATGCTTTTCAGAGATTTACTTTTCATTGTTCGCCGCCACTTCCCCTGATAATGCCAATGAGGCCTGTGTGTCTTTGGTATAATATTCATTTTTTCTTATTACTATTTTAGTATTCATTTATTCATTCACAG
Seq C2 exon
GAGGAGCCATCTCCAACATGTACAGCATAATGGCCGCACGCTACAAATACTTCCCCGAAGTCAAAACCAAAGGCATGGCTGCAGTCCCTAAACTGGTTCTCTTTACCTCAGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009589:ENSGALT00000015628:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(10.1=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTATGAAATTGCCCCTGTT
R:
TGTTCTGAGGTAAAGAGAACCAGT
Band lengths:
224-1561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]