GgaINT0050760 @ galGal4
Intron Retention
Gene
ENSGALG00000009589 | GAD67
Description
glutamate decarboxylase 1 [Source:RefSeq peptide;Acc:NP_990244]
Coordinates
chr7:17710125-17711690:-
Coord C1 exon
chr7:17711578-17711690
Coord A exon
chr7:17710241-17711577
Coord C2 exon
chr7:17710125-17710240
Length
1337 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
ATTCATTTATTCATTCACAGGAG
3' ss Score
6.99
Exon sequences
Seq C1 exon
GTTTACGTATGAAATTGCCCCTGTTTTTGTCCTCATGGAACAAATAACACTTCGAAAGATGAGAGAGATTATTGGATGGTCGAATAAAGATGGCGATGGAATATTCTCACCTG
Seq A exon
GTGGGTTTTTCTCTTGTGCTTGTAGGTTTGACTAAAAGTTAAAATAACCATAAGATCAGTCTGAACATCCACTTTCTGTGTGAAATGTCTGCAAGACCAAACAACATGTCAGAGATTCAGAAGTAGGAGTTTCCCACCTGAAGTATATGCATTGTTCAGGCATCCCACAAATAAGGAAAAAAGAGATTTTTATTTTCGAGTATGTCTGTGTATCATGGCTACATAGAACACTGGCTAACATCTGTAAAGCTTGATAACAAATTCTGGAACATGGTTAGGCATTTAAACACCCTTTGTTGTGCCTTATTTCTCGAGGTGCTGACCTCCAGAACCATGTCCTGCTATTGAGAAAGAGACTACACGTAACTTTCAGAAAATCAGCTGGATTCCCAAAGTATGGTTCTGAAGTACAGGCCATAGTTGCCTTCCTGTGAAGGTGGTATAAAAGCAATCAGCAGTTGTAGATAAGAATGGGAAAACATGCGGAAGGCCTGGGTCCATGTCTGAACAACAGGTGCCCAACAGTACTCCAGGTTTCTGGGTTTGTTGGTATGGGGAAGACCATCCTGTTTCAGAGGATGAAGGACCAATTCTGCCTCCTCTTGGAACAGCCTGCATAAAATCCAGGAAAGCACTCTGGCTTGATTTCTAGTCCCATATGCGAGAAAATTTTTGCCCAGTGTTCTGGTTGATGAAGAAATAGAAGTGGAATAAATACTCCTAAGCTCTATAGATGAGATTCTTCTTACTAAATCTTGACATCTGCATTGTACAACTAGGCTAGCTGCACTGGGCTTTTTGTAGAATAAAAGAAAGAGAAAAAGATGGTTTTTTTTCTCAACTCACATTCCTCAGAAGTATCAAAATATACTAGCTGGATCAGCCTGCAAAGTGCCTCTTTAAACTCGCTATGAAGGTAGCTTAGGATTACTACCTTAGCTGGAGAAATTTACCTTTTAGGCATCTGGTTCTGTATTTACAGATGAGATGGGATAAATCTATACTGTATATGACTTTAGCCTCGAGAGAATTTGATAACTTCCCATTTTTCTTACTAACAAGAAGCTGTCCTGCAAAAACCAGCACAATGAAAACTGATTATTTTAGGAAAGTGTTACAAAATATTAGCAATTGAAAGAGATGATAGGTTAGGCTGTTGGTATAACTTTCTAGAGCATCTGTTCTTGTGCTACTTAGACAGACGCCATGCTTTTCAGAGATTTACTTTTCATTGTTCGCCGCCACTTCCCCTGATAATGCCAATGAGGCCTGTGTGTCTTTGGTATAATATTCATTTTTTCTTATTACTATTTTAGTATTCATTTATTCATTCACAG
Seq C2 exon
GAGGAGCCATCTCCAACATGTACAGCATAATGGCCGCACGCTACAAATACTTCCCCGAAGTCAAAACCAAAGGCATGGCTGCAGTCCCTAAACTGGTTCTCTTTACCTCAGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009589:ENSGALT00000043162:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(10.1=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTATGAAATTGCCCCTGTT
R:
TGTTCTGAGGTAAAGAGAACCAGT
Band lengths:
224-1561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]