GgaINT0050849 @ galGal4
Intron Retention
Gene
ENSGALG00000011149 | PLA2R1
Description
secretory phospholipase A2 receptor precursor [Source:RefSeq peptide;Acc:NP_996866]
Coordinates
chr7:21337040-21338354:+
Coord C1 exon
chr7:21337040-21337183
Coord A exon
chr7:21337184-21338165
Coord C2 exon
chr7:21338166-21338354
Length
982 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTTGTATGGTTAACTAAAAGATA
3' ss Score
1.05
Exon sequences
Seq C1 exon
ATGTTTCTGAGGACCATTCTAGTGAAAATCATTGTGCAGTGATGAGTTCAAAATTGAAATACGGCTGGAAAAGTTACTTATGTGAATCTGGATTGCCTTTTGTATGCAAGAAATATTTAAATAAGATAGAGCAGGAAACACTGG
Seq A exon
GTAAGTCTTTCAGTGTTAATGTGTCCTCTTTCTGAATATGGAAAGAGAGCAGGAGGAAGCTACCTGAATAAAAAGTCATCAGAACAGAATGTTAGCTGCAGTAAATGTGTGGGTTTGCTACTTTAAGCTACTTTTTGCTACTTTACCTTAACTGAAGTGGTGACAGTTTCTTCTGCTCAAATGCAGTCCTGGACAACACCATGAGAGTTTTGAAACTGACACATCACTTCAATATACATAGCTTTTAATTGATTCCTTACATTATCAGCGGCTTACAAAATGCTCAGTCTCTTTATATTTCAATACATCCACAATTTTGAGTTTAAAAGCAGCCTTAGAATGGAAGTTAAAAATGGAAGCTGAAAGTTAAGCTTAGAATGGACTTAACCAATTGCCTGCAGAGGATGAAGTTGCATAAATGCAGCTCTAAATTTGCAGTTATTTTTATGACACGCTGTGCTTTTCTTATACTGAAAAAGAATTGTGCATGTATTTTTGAAACTGTTAATATAATATTAGTGTATAGAATGCCTCAGATTCCCATTCTGTGGGAAACTTAAAGACTTGTGTTTATTTAAAACCAGATAGGTCCAACTTTTTCCTGATGAATCAGAAGTTTCCCTGCCTGTTTCAGGCAATGAAACGGGACTTACCACACTCTTCACAGGTACTCTATCTGGAAAAGTTTCAGTTGGTTTTGGATCAGGCCCAAAGGTAATAAGGAAATGCAACAAGTTTTAAACTGAATATCAGTTCTATTAGTGTGTTTGTACTAGTCTAGCAACCTAAATGGTTGAGTCATAATATAAGGTGGGAAAAAATTCTGTAGGTGATGTTCCATAGAGCATGTGTTTTGTCCTCCATGGAATGACTCTCTTTTCAGCATCTGAAGATCAGAAAATAGTTCCACATGCATTATAAACACAGTACAACCTCAGTAATTCTATCTAATATACTCTAACTTTGTATGGTTAACTAAAAG
Seq C2 exon
ATACGTGGAAGTATTATGCCACTCGTTGTGATGCTGGCTGGTACCCATACAATCGTTACTGCTACAGACTTCATAAAGAGGCGAAGAGCTGGAATGATGCTTTGATCTCATGCCAAAGTGACAACAGCGGGCTCATTAGTATATCCTCCATGGCAGATGCAGAGCTGCTCCATAACTTGCTTCAACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149:ENSGALT00000033111:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(33.3=75.5)
A:
NA
C2:
PF0005916=Lectin_C=PU(33.9=57.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCTGAGGACCATTCTAGTGA
R:
TGAAGCAAGTTATGGAGCAGCT
Band lengths:
327-1309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]