GgaINT0050867 @ galGal3
Intron Retention
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23446890-23447816:+
Coord C1 exon
chr7:23446890-23447128
Coord A exon
chr7:23447129-23447647
Coord C2 exon
chr7:23447648-23447816
Length
519 bp
Sequences
Splice sites
5' ss Seq
GATGTGCGT
5' ss Score
4.37
3' ss Seq
ATTTAATATTTTTTTTGCAGAAT
3' ss Score
8.53
Exon sequences
Seq C1 exon
ACACATCCAGGCATATTGTCAATGCATCTGAAATGTACCCCGTGCCAGATACTTTACAGTATGCAAACAGAACATATACCCTAATACGTGGGAATTTTACATGGTCTGCAGCTTTAAAAGCCTGCATGGCAAATGGAGCTGAGCTGGTCAGCATTGCAGATCAGTACCACCAGTCTTTCCTCACGATCATTGTGAATCGGCTGGGATACAACCACTGGATCGGGCTGTTCACTGCGGAT
Seq A exon
GTGCGTAATGGGTTCACTGTCTGTCCATACTATGCTGCAAATTAGTTTTTTCAGTAGCAAACTACGAGTTCTGTCGTTCATTATAAGTCACAGGAAGTTCATGTTTGGTAATGAAACCCCTACTTGAGCCTTTTATCAGCCCTCTTACCATATTTTGCGGCATGATACATAAAATTAATGAGAGCTAGTTTGGTGCAGTGAGTACTGAAAAAAATGAAACCCATAGAAAATACTAAAAAAAAAAATAAGAAAAAGAATCCCTTCTATTGTTAGCATTGAAATTAAGTTTCATTTTGAGCTGCCTTGTGGCCCAGATAATCACTTCCACTCAATGACCTGGACGTTCAGCTACCGTTCAAAACAGCAGGTTAGATATAGTTTGTGTTCTCCTAGAAATAAGTTGAGAGGATCTTTGAAACTGCCCAGCACTAAGGGAGAGGTGAAAGGAATTCTGATCAAGATGCCACCGGAAAGGAAAGTATGGCAGTGAACAGAAATAATTTAATATTTTTTTTGCAG
Seq C2 exon
AATGGGCTTAATTTTGAGTGGTCAGATGGGACTAGATCCTTGTTTACCTTCTGGGAAGATGATGAGTCCCAGGCCTTGGGCAGCTGTGTTTATATGGATACCTCTGGGCGCTGGAAGAGTACCAGCTGTGAACGACTCCTGCCCGGAGCAGTCTGCCATGTGCCACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149:ENSGALT00000033111:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(52.2=60.0)
A:
NA
C2:
PF0005916=Lectin_C=PD(51.5=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCCCGTGCCAGATACTT
R:
AGGAGTCGTTCACAGCTGGTA
Band lengths:
346-865
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]