HsaINT0126458 @ hg38
Intron Retention
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1 [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr2:159949608-159951578:-
Coord C1 exon
chr2:159951340-159951578
Coord A exon
chr2:159949777-159951339
Coord C2 exon
chr2:159949608-159949776
Length
1563 bp
Sequences
Splice sites
5' ss Seq
GATGTAGGT
5' ss Score
4.9
3' ss Seq
GGCTCAGTTTTCCTCCACAGAAT
3' ss Score
8.15
Exon sequences
Seq C1 exon
ATACTTCTGGACACGGTGTAAATACATCTGATATGTATCCAATGCCCAATACCTTAGAATATGGAAACAGAACTTACAAAATAATTAATGCAAATATGACTTGGTATGCAGCAATAAAAACCTGCCTGATGCACAAAGCACAACTGGTCAGCATCACAGACCAGTATCACCAGTCCTTCCTCACTGTTGTCCTCAACCGGCTAGGATATGCCCACTGGATTGGACTGTTCACCACAGAT
Seq A exon
GTAGGTATCCTAACTCCCTTGAGACATCCTTGAATAATTAAGTTTAGCATCTACCTCCTTCATGATCTGGCCACTGAAATTAGCACTGAAAAAAAGATCCCAAAAATATTAATAAATATAACACTTAAATAATTGGTTTATGCAATTACCTGACCAACCTTATGAACAGCCTATGACTACAAAATAAGAGTGCACACCTCTTTAGGGTAAACATCCACTTGCCTAATGTCTGGAAATTAATACCATTCAAAGGTTCTCTGAAAATTTCCAAGTACCCCGATACTGCCTTGCATGTGCACTGGAACACAGCTGAAACTCAAGCACTGCATTTGGGAATTTGCGGCATTTAATGAATCCCCAAGAAAAAACGAATCATGCTTCTTGTCTAGAAATGTGATTATTAATTAGTTTAGTACCACTTATAATTAAGCACTTGAGGTTTTATTTTCCTCTAGGGATGTGGTTTAGAGAATACGTTATTTTCATTTTTTTAAATAAAATATTGTACACTCAAAGTAGTGAAAAGTAAACTAGTCTATCCTGACCCCTAGTTCTACTCCCTAATGTTAGTAATTGTGAACACTGTCTTGTGTGCCATCTAGAAATTTTCCATGTATACACATACATATTCATGTAATGGAAGAATATGTACATTGTTTTTCAAGCACAAATGAGATCCTATTCTACATGCTGTCTTTAAACTTGCTTTTTAATTTAATATATCTTTAACAACTTCACATGTCAGCACATAAAAATCTCATGAATTCTTTAGAACGCAGCATGTAAGGATATACCACAACTTATTAAACCATTCTCCTGTGAATAGACATTTGGGTTCTTCTCAGTTTTTCACAGTTATAAACAATGCACAACAAATATCCTTGTGCCAGTAGGATAATTTTTTAGAAGTAAAATTGCTGCGTACACTTAAAATTTTGACAAGTACTACCAAATTGCCCTCCAAGAGTTTGCACCAATTTACATGCCAACAACAGTATGTGATAATGTCTAGTTTTTTCACATCCTTGTCAACACCAGGTATTCTCAAAATTTTAATCCTTGCCAGTGGGAGAGATAAATGAATGATATTTCATGATTATTTATTGCATCATGTAGTACAGAATGTTTTAACTTCATGTAGTCAGTTTTGCTTTATAGCCTCTGGATTTTCTATGACTTGGAAAGGTTTTCCCCACACCAACAGTATAAAAAAATTTAACCAGGTTTTCTTTAACATGTTTATGTTTTCAATTTTATGTTTGAATAATTGATCAATCTGAAATGTATTTCACTGTAAAAGACAAGGTACTGGTCCAATTTCACGCCGATTGCTCACTAGAAAATCATTGTGGCAGGGAGCCAAGAATTCCTAAAAATCAAAAAAGATCTCATTTGTGGCAGATATTCCTGTTTGTCAAGCTGTATTCACAGATGTCCTAGCCCCTCTTTAAAAAGGTGTGCAGAAATAGCAATCGATGTGGGAATTGTAGCATGCTCAGATAACACTGGGTGATGCTGCCAGCCGTCGTGGCAAGGAAATGATGGCTCAGTTTTCCTCCACAG
Seq C2 exon
AATGGTCTTAATTTTGACTGGTCTGATGGCACCAAATCTTCTTTCACTTTTTGGAAAGATGAGGAGTCCTCCCTCCTTGGTGACTGCGTTTTTGCCGACAGCAACGGACGCTGGCATAGCACAGCCTGCGAGTCATTTCTGCAAGGTGCCATTTGTCATGTGCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246:ENST00000283243:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(47.1=61.2)
A:
NA
C2:
PF0005916=Lectin_C=PD(51.0=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATCCAATGCCCAATACCTT
R:
AGAAATGACTCGCAGGCTGTG
Band lengths:
346-1909
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development