GgaINT0050870 @ galGal4
Intron Retention
Gene
ENSGALG00000011149 | PLA2R1
Description
secretory phospholipase A2 receptor precursor [Source:RefSeq peptide;Acc:NP_996866]
Coordinates
chr7:21360907-21361621:+
Coord C1 exon
chr7:21360907-21361023
Coord A exon
chr7:21361024-21361444
Coord C2 exon
chr7:21361445-21361621
Length
421 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTATAACTTCTGCCCTTAGATG
3' ss Score
9.31
Exon sequences
Seq C1 exon
GATCAAATCTTCTAACTATCAAAGATGAAGATGAAAATGCCTTCATTCTGGAGGAGCTGCACAGTTTTGGTTATTCTGTGAAAATGGTTTGGTTGAACATCCTGCAGGTTACAGACA
Seq A exon
GTAAGTTTTGGGTGGAAGAGAACTCAATGTAAGAATCTAGGATATTTTGTTTTGTTTTTTAATGCTGATATAGCCATCTTACAAAATACTGTTGCTTTTTGAGATTCTTATTTTCACTGTTTATTGTTTACGATGTAGTAAAAAGCTGTGTTTGTTACTTACTAGGATTCTGAATAGTCAGTATGTATGCATGCACGTGAGTGCCTTTACTGGCTTGATAAAGAAGCTCTATGGGCTGTGTCAACCACGTAGTATGGTTTTAAAATCTTCAACAAAGAAAGGAATACAATAGCCCAACAGTGTAGTAGCCCAGCATTGCTTTTGTACAATAGTGTGTGCTTGCATGTGAAAGTGAGTTCAACTGAAACAGATGTTTACTGAAACATGATATTTTATAGCGATTTATAACTTCTGCCCTTAG
Seq C2 exon
ATGAAACTGTCTCCTGGTTTGATGGCTCTCCCTTAAATTATTCTAACTGGGGCATCAGGGAGCCTGAATTTGATCATCTCAAGGGGAATTTCTGTATCAGCCTGAGGACTGCGGATGGTGTATGGCAAATATCTCCGTGCAGAGAAATAAAGGGATTTGTATGTAAAAAGGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149:ENSGALT00000033111:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.1=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(50.5=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCAAAGATGAAGATGAAAATGCC
R:
TGCATCCTTTTTACATACAAATCCCT
Band lengths:
278-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]