HsaINT1027241 @ hg38
Intron Retention
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1 [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr2:159944906-159946917:-
Coord C1 exon
chr2:159946801-159946917
Coord A exon
chr2:159945083-159946800
Coord C2 exon
chr2:159944906-159945082
Length
1718 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
AGTCAGCAATTTTCTCACAGATG
3' ss Score
4.35
Exon sequences
Seq C1 exon
GTTCTAATCTTTTAACAATCAAGGATGAGGCTGAAAATGCATTTCTCCTAGAAGAGCTGTTTGCTTTTGGTTCTTCTGTCCAGATGGTTTGGTTGAATGCTCAATTTGATGGTAACA
Seq A exon
GTAAGTGATTTGGGTAGAGGAGAGGACATAAATAAATACATGGTTGTTAAAGCTGATGATAATGGCATCTGTGAGCCAGAAAACTCTCCTTGGATACGTTTTCTGAGAAAAAATAGCATGAAGCCTAAAGCCATTTCTTCCAAAAACAACATTGCAACCCTTTTCTTTACCCTTTTGTCTTTTAAAATAATCCCAGAACACCAAAAATAAAAACAAACAATAACATGTTTATCTTTACCCTTAGCAGGAAGATGCTTGGCTGGAACTTTGTGTTCACAGACTTAGTCATTGCATACCAAAACCATATTTACTGGAAAATATCCCAGGTTTCTAAATGTTATAAAAGCACAATAGAGTTATGGAAATGTTTCCATGATGAACTGTGCTGTTAGGATTCTTATTTGCTACTCATAAAAACCAGAGTTTGTAATAAAATGGAAGCATGGTATTCTTTTCTTTATGTAATTGATGGTTATTGAAAGGTACTTGTGAAGAAAATTATTTTAATTGGTATGGAGAGCTTGTTACAGTGGTGTACCAAGGTTGGGGGTGAGCCTACCCTTTCGAGGAGGAGTATTTTAATCACCAACATTGTTTAGAATTTCAAGCAGATGGTGATAATAAAAAGCAGACCAACTTTTAGTTAGCTGTATTGTTAGTTTTAAATTATTTTCAGACAATACACTATTGCCCACACATGGGATGGACTCTCCTACCGCCCCTACCCCCTTGGTACATGGCTGGCTTGGTATTAAAGAAATTCACTGTAAAATCTTTTTAGAAAGTGAGCCATTTTGTAATGATGAAGATGTTAGGACTTCAAAGGATTTTTCTTTACTCGATTAGTTTTGTTTATCAAATGATTTCTTTAAATCGATTATATATATATATGGAATATTTCAAAATTCAAACTGTCACATTAAGAAACATGATAACCTAAATGACCTAAATAAGAACACTGTACCTAAAATAAAGAGGCAACTTTATTAATGCCTACCTTTTGATGTTGAGTACATCACTGTATTTACTGAGTTGAATGTATTAGTTCAAGAGTCTCATTAAATTCAGGGGCTGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATACACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATATACCATGGAATACTATGCAGCCATAAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATAAAATTGCAAATCATCATTCTCAGTAATTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGAACACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGAGGGAGGGATAGCATTGGGAGATATACCTAATGCTGGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGTCACATGTATACATATGTAACTAACCTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAATAATAAAAAAATAAAAATAAAAATAAAAAAATAAAAAAATTCAGGGGCTGCTTTTTATGGTTAATTCCAGTCTTAGTATGTTTGATAACCATGCACATAATTCATAATGAGTCAGCAATTTTCTCACAG
Seq C2 exon
ATGAAACCATAAAGTGGTTTGATGGAACTCCCACAGACCAGTCAAACTGGGGCATTCGGAAGCCAGACACAGACTACTTCAAGCCCCATCATTGTGTTGCCTTGAGGATCCCTGAAGGATTATGGCAGCTATCCCCGTGTCAAGAAAAAAAAGGCTTTATATGTAAAATGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246:ENST00000283243:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.1=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(50.5=93.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTAACAATCAAGGATGAGGCTG
R:
TGCCTCCATTTTACATATAAAGCCT
Band lengths:
286-2004
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains