GgaINT0051018 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6933235-6934492:-
Coord C1 exon
chr7:6934390-6934492
Coord A exon
chr7:6933300-6934389
Coord C2 exon
chr7:6933235-6933299
Length
1090 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTCTTTTCCTTTGCTTTTAGCTG
3' ss Score
9.6
Exon sequences
Seq C1 exon
TACAAAACAAGTAAGGAAGGCAGCACGGTGGGCATTAGTGTATCTCATGCTTCCATGCTGGCACACTGTCACGCATTGACTCAGGCATGTGGGTATTCAGAAG
Seq A exon
GTAAGTTAGGTATAACTTCAAAATGACATTTATTGCTTTGATTGTTCAGGAAAATTATGTCACAAAATCACGTTTTCTGCCTTAAAATAACTTCAGATCATCTACGGAGTCTATCGTACAATGCTGTGAAACTGCTGACTGCTTTTTCCATCTAGCATGGTTATATGCAGTTCACTTTTCCTAAAGGTCAAAAATATTGGAGGATACAGAAGATGTATATCTCCATGTATAGGAATGGATATGTGCCTGGCTAACTGGAGTATTTTGTTTATTGGGAAATAGCTATATATGCTCTTGTATTTTTGGAAAACTAAACAAGAATAATAAGTACTTGAAGAAGCATTTCTTCTACATTCAGCCATCCTCCATCCTTGATTAGCAGATTTCACCTGACCAGTAAAAGACGTCCTTCTAAAATCTGGTTAGATCTTATGCCAAACTTTGATTTATGTTTGGAATCACGTAAGTTCGAATTTCTCAGAGAAAGCACTGAAGAAAGTTTAGTACAGCTGTGGTAGTATTTCTCACTAATATGATTCTTTCAAATATAGTTGAACCACTTTTAGTTGAAAATTTCTTCAGTTGGCATCAAAATCAAAGTTTCAGTCTGTGTAGTTCTTGGAAAAAGGTAACAAGCACTCAAAATGGTATTAAACTAAAAATCACGTCTTACAGATTAAATTATTACAAAGAATTTAATTGTAATTAAGGTGATTGTAATAAATAAGGTACTTTCAGGTACTGAGAGAGTGGTGAGGTGCTGGAACAGGCTGCCCAGAGAGGCTGTGGATGCCACATCCCTGGAGGTGTTTAAGGCCAGGTTGGATGGGGCCCTGGGCAAGTACTTGATCTAGCAGCTGGCAACCCTGCCTGTGGCAGAGGCGTTGGAACTTGATGATCCTTGAGGTCCCTTCCAACTCAAGCCATTGTATGATACGATTCTATGACAAGGCATCCTATATTATAGACAAAAAGACATGGCAACATAGTTTTGAGTTGTTAGATGTATTGAAAGTTTCATAGCTGCTTTAACAGGTATCTTAAATTCATAAATGTTTTCATAAAACTGCTTCTTTTCCTTTGCTTTTAG
Seq C2 exon
CTGAAACACTAACAAATGTGTTGGATTTCAAAAGAGATGCTGGCCTTTGGCATGGAGTATTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.1=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]