RnoINT0047700 @ rn6
Intron Retention
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13092513-13093940:+
Coord C1 exon
chr20:13092513-13092615
Coord A exon
chr20:13092616-13093875
Coord C2 exon
chr20:13093876-13093940
Length
1260 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTTCTGTGTCCGCTTTCAGCCG
3' ss Score
10.29
Exon sequences
Seq C1 exon
TATAAAACCAGCAAGGACGGCAGCACAGTAGGGGTCACCGTACCCCACTCATCCCTGCTGGCGCAGTGCCAGGCCCTGACCCAGGTGTGTGGGTACACGGAAG
Seq A exon
GTAAGGCCCTGCATTCCGGAACGCAGTTTTGCTGCTGCATAGGTACCTGACGTACATGGCCTCACCCGTTGCTGTGCATGGTGCATTAACTTTCAGTGCAGCCGCACCAGGCAGCAGGCGCAGGTGTCTACTGCAGGTCCCCCTCTGCAGAGCCCTGGCTGCCCCACCCAGGGCAGTTGCAGTAAAGTAATGCTAACACGGACTTTATGGAGTGTGAGATCTGTGCACCGGTGGTTCGGTTGTGCACGGTGGCGGGATCAGTTGTTGGGCACTGCAGTGAGCATCGTAAGCACTGGAGGACAGTCCTCTTGCAGCATCCTCTCTGCTGGCGTTTTCGTTGTCAGTCAGTGTGTTTGTGGCCGAGCAGTCGTGCATGTGAGTGCTTAGGTGTGATCTTTATGGTCTCAGCTTATCTTGTTAAAGTAGAGCCCCAATTCAGTGAATACTTTAAATGCATATTAAAGTGACAGATGGTAACTGTATATATTTATGGGATCAACAGGAAATACATTATTATAAATGCTAGAATTGGACACAAATTGGTTTTCTTACATTGCAGAATTGGAGCTGAGCAAAACTAGAAAGTAAACTTGAGTGTCATATTTAAATACATAAAATACGATATTTAATCTCAAGGGTTAGCATGTGGGCACAGTGATAACGATTTTGCCGAGATTTTCAGGTATTTCAAGGACTTTAATGGTTTTTTAAAAGTTAGTTCTGTAAAACAAAATCCTACGAGGTCTTTCTACCTCATGTAATCATGTAATTCCTGCCACCTTTAGTTTGGCACTTCAGCTAACAGGGACGGGGACATTGTCGTTCAGAGTGCAGCGTTTCTGGCTTGCACGTCGCTGCTCTGTACAAGTACGATGCAAGACTGCGGGCTGAGGGTGTGACAACTGGGGGAGTCTGGGGAGGGGGCTGAGAAATGAGTGCCCATGGCAGTTTGTTGCCCTGCCTCCTGCTTCTGAGAGGCGGCCCTCACAGTGGCGCGACCACGCAGTGACCTTTCTGTGGTTTGCTGTATGTAGTGGTCCTTGTGCTTCTGAATTGAAGATCAGCATGGTTCCCCGCTCCAGGCCAGAACTGTGTTTCCAGTCACCTGAACAGACATGTAGCTCGCTGTTAACCGGTGCATGGTGTGGAAGGGCCGTCTGTCTCCTGAAGCTCTGGTGCTCTGGTTCCGTACTCATCTCGGGGCCACGCTCAACACGTGCAGTGCTTAATGAAGTTTTAACTTTCTGTGTCCGCTTTCAG
Seq C2 exon
CCGAAACATTAACGAATGTGCTGGACTTCAAAAGGGATGCTGGTCTGTGGCATGGAGTCTTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212:ENSRNOT00000066017:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.1=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]