GgaINT0051033 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6915182-6915660:-
Coord C1 exon
chr7:6915549-6915660
Coord A exon
chr7:6915292-6915548
Coord C2 exon
chr7:6915182-6915291
Length
257 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTTTGATGTATTTTAAATAGATG
3' ss Score
6.75
Exon sequences
Seq C1 exon
GTCAGTAAGTCTGCATGTATACTCACCACACAAGTGATAACGAAACTGTTGAAATCCAAGGAAGCTGCAGCAGCTGTAGATATTAAGACATGGCCCACTATTTTGGATACAG
Seq A exon
GTACAGAATGTTTGCCCACTAGCTAACAGGAAATGTAAGTAGACTGGAGACTTTTTTCTTCTGTTAGACCATAGCTGTCTGATTGAATGGATCTCTCTTACATTGCATTGACCTAGTTGTCCAGAAACTGTAGAAGCATCGAGTGTTAATGCTATAAATGCTATAGTGCTGGAATGATACGAAGATAACACTGTTGTCCTGTGGTCTCTTTCCAAAATGATAACATCATACCTTCTCTTTTGATGTATTTTAAATAG
Seq C2 exon
ATGATATGCCTAAAAAGAAACTGGCTAATATTTTCAGACCTACATCTCCAGATATGTTGGCATATTTGGACTTCAGCGTGTCAACCACTGGTATATTAGCAGGAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTAAGTCTGCATGTATACTCACC
R:
TTTACTCCTGCTAATATACCAGTGGT
Band lengths:
220-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]