MmuINT0049551 @ mm10
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76274989-76276440:-
Coord C1 exon
chr10:76276329-76276440
Coord A exon
chr10:76275099-76276328
Coord C2 exon
chr10:76274989-76275098
Length
1230 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGGTATCTTCTGTTTAACAGATG
3' ss Score
8.93
Exon sequences
Seq C1 exon
GTCAGCAAATCTGCGTGTGTCCTCAGCACACAGGCCATCACACGGCTGCTCAAGTCCAAAGAGGCAGCTGCCGCTGTAGATGTCAGGACCTGGCCAACCATCCTAGATACAG
Seq A exon
GTATGTGTCTCCAGCAGCCACCCCTGCAAGGGCAGACTCTTGCTTTCTTTCCTGTAGGCTTGCTGCTGCTGGAGTTATGTTGTTGATATGCAAAAGAGACGACTCGGTGGTTAAGAGTACTTGTTGCTCTTGCAGAGGACTGGATGTGACTCCCAGAACCCATATGGAGGCTTATAACTCCAGTACTCAGGGAGCCAGTGCCCTCTTCTGACCTCTACACGTATATAGTGCACAGATAAATACATACATAATACATAAATACATAACAAAATAACATTGAAAGCAATGACTGTTTGGATAAATAGATCAGGTGTGTAGATGGTGAGAGGGGTTCTCGGGTTTACCTGGTAGAGCAGTACACTGTTGGAGGGCCATTAGGTACCACTGCAGCTTACACGGCTGACCCCTGGCCAGGATGTGGGGTCTTCTCCACTCTGTGCCCACCATCAGCAGTCTCCATACTTGTGTGGGGGACTGAAATCCTATTCTTTACTGCCTCTTACCTGTCATTTGTGAAAACTATGCCCACCCCCAGAGTCCCCATCACTCTCTCGGGTAAGTGATATCGTGCCCCTGAGATGCCTTTGGCTCAGCTGAGAAGAAGCTGTGCCCCTGCTTGAGACAGCACGGTGGCTGAGAACAGCTCTGCAGATATAGACTGCTCCACCTAGCGGAGCCCGGTACCGCCAGGGACCGAGTGCTGGCTTGGGAACAGCAGGAACCTCTCCTTTTATGTCATACCCTTACATCTGAAGTTCTGTTTTATGTGGAAACCAGAGACTAATAGCTGATACCGCGGCAGGCATAAAGAACTAGTACTGGGCAGCTGACACTGGCCAAGGGTCAGGCTGTGAGCTCCAGCTGGGCAGAGTCTTTCAGTCTCGAGCTCAGTTGGCTCTTGTTGAACCTGCACCCATTTGTGGCTCTGCCGCAGCCTCTGCGATATCAGCATATGCTGAGCACTGACCTTTCCGATCAACAGCGAAGGGACTCTTCCTGTTGCCTCCAGGCCCACAGAATAGATGTGGCAAGCCTGCACCACAGATCACTCCTGAAAGAGTGAACCATCCCACATGTAAACTGCATACACCTCCTGCCCGCTGGTAGCCTGACTTCTGTGACAGATCTGTCTCAGGACTCAGATCATGCCTATTTCTTGCCTGGGGAAGTTGAAGCTTCTACCTTGTGCAGGCTGTGTGACATTTGCCACTGGTATCTTCTGTTTAACAG
Seq C2 exon
ATGACATTCCAAAAAAGAAGGTGGCTAGCATTTTCAGACCGCCCTCCCCAGACGTGCTCGCGTACTTGGACTTCAGTGTGTCAACGACAGGGATCTTAGCTGGAGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231:ENSMUST00000160048:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATCTGCGTGTGTCCTCA
R:
ACTCCAGCTAAGATCCCTGTCG
Band lengths:
214-1444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types