GgaINT0051932 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:17181352-17182266:-
Coord C1 exon
chr5:17182167-17182266
Coord A exon
chr5:17181505-17182166
Coord C2 exon
chr5:17181352-17181504
Length
662 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TGTTCTCTGCCCTTCCCTAGAGC
3' ss Score
10.39
Exon sequences
Seq C1 exon
ACACCTTTCACCCTCACCTTGCGGCTGTGGGACATCTACATCCTGGAGGGAGAGCGGGTCCTGACAGCCATGGCTTACACCATTCTCAAGCTGCACAAAA
Seq A exon
GTAAGTGTTTCGTGTGGTGGGCAGGCAGAGTGTACAGCATGAGCTGCCACGTAGCTGCTAACTAAGGGATACGGCGCTGGGGTCGGGTTAGCCCAAGCCTGTGCTGCCATCCAAAGGCAGTGATTTGCTGCCGGCTGAAACAGCTTCTGCACGGCTGCCGCCTCCAGAAAGTTTTAATTCTGATGGCAGGCAGCAGTTTCAGCCTCGCTTTGAAATTTATCTGTGCTCCAAGGAGTGTGAGCAGCGTGTGGTGTGGGACATGTCGATGCCCCATCCAGTCCCTGCCTGTATCCCATTCCTGCCTGCGGGCATGGGTGGAGGCGGCCACCGGGCTGTCTCATGGAGCTTTTTCTCCTCCTAGAGGTACTGAGGAGAACTTGCAGAAATGGCCTTTAGCTTGCGTACTGTCCTTCATAGGCCCTCACACCACCATCAGCAGCCAGCCCCTACTGCTGAACTGCTGCCCAGAGGAAGTGGGGGGGAAGGCATGGCTGGCATAGACAGCCCCAAGTCCTCAGCATTAAAAGAGCATCGGGACACGTGGCTCAATGGATTTCACTCTTCACCTAGACAACCCAGTGCTTGTTCACTTTCCAAAACAGAGCTGTGGGGTCAGGCCGAGCCCCTGCTCTGACCCTGCTGTGTTCTCTGCCCTTCCCTAG
Seq C2 exon
AGCGCCTGCTGAAGATGACGCTGGAAGACCTGCGGGAATTTCTGCAGGAGAAAATCGCCGCGTCGCTGCAGTACGAGGATGATGCTGTCATAGACCAGCTGCAGGTGTCCATGAGCGAGCTGCGCAAGATGAAGTTTGACCTCCCCCCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897:ENSGALT00000011170:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(15.9=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTTCACCCTCACCTTGC
R:
GGGGGAGGTCAAACTTCATCT
Band lengths:
246-908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]