GgaINT0053596 @ galGal3
Intron Retention
Gene
ENSGALG00000009315 | PAPLN
Description
NA
Coordinates
chr5:28492661-28495673:-
Coord C1 exon
chr5:28495547-28495673
Coord A exon
chr5:28492869-28495546
Coord C2 exon
chr5:28492661-28492868
Length
2678 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
CTTGATTCTGTGACCTGCAGGTG
3' ss Score
8.47
Exon sequences
Seq C1 exon
GCTTCCAAACCCGCTTGGTGTTTTGTACCATAGACAATGAAATTTATCCAGACTATATGTGCAAGAACAAACCACAACCAGACAATAACCGGACATGTGGCCATCAGACTTGTCCCCAGACAAAACG
Seq A exon
GTGAGATTTCCTTTCCACTTCTGAGCTCTGTCTTCCTCCTGAAGTGCTTTTGGAGCCAGGAAAATAGTGCGTGGTGCTTTCCAAGGAGATGTTTCACTTCTTAGAGAAAGCCCAAGACAAAGTTGAGGATGATAACTATATGACAGGTGTTTTTGTGTGCACAAGAAATGAACTTGATATGTCCTATGTTCATTTTGTAGATCAATTACATTTTCTTTCTAGCATGATTGTGGAAAATAGTCTTCTAGCCCATACAGAAGGTTGGAATAGAATCTGTGGTTTTTGTTCTTTTCAGCTGGAGCCTGCCAAAAAAAAGAGGAGTAGGTCTGAGCTGGTCTAACTTTGTCATTTCTGTGTTCTCAGCGTCCTTGCCCTTTGAAATAGATGAATCCTGGAATCTTCTTCTTTTCTATTATTTTCAGACCCATTTAATCAACCACTTCCCCCTTGTCCCTTGATTACACAGCCTTGAAATTGGCTGAAATTGGCTCTTATAAGCATCCAGAACTGTAACCAGAGCCTTAACTGCACATCTCACTGTGTGTCTGGTTAGTATAGTGGAGACCTTTGAGAGTGCTGTTGTGGGCCAGGGAGTACCTGGAAAACTGGGAACATTTCTGAATTCATGGTAGCCCATAGCTACTTGCTTTAAGTTGTTTAAATTCTTTATTCTGTGTGTAAAGGACTTCTTACATCTTTCCGCCACGAGCTTGGAGCCACGGTGGAGCACGAAACTCTCAGATGAAGAGGTAACAATGAGGAGACAACAGGCAGGCTCTCTTCTGCTCTCCACCTAGCTGCCCAGTGGAGTCTGTGGGGACTTGGGGTCTTTCCTTTGGCTCTGATGGTATCAGTGGGCCATGCTTTGCTTTTGATTCTTGCCAATGAAAATGATGGTGGAGGGTGCTGGCTGGCAGCTTTGCTTAGGTGGTTTTGAGTGCTGCTGGTAGTTTAACTAGTATGGAGTTGAGGAGGAGACATTTTCTTCATAGCTTTTGGCTTGATAATTGTTGCTTTAGGCTAGAGTGGTGGAAACATGTTTTATAAGACTTTTGTTTGGTTAATCAAGATAAAAAGCAGGAAAAGAGAATGTGATGGACTAGGTCTATTGAATCATTGACCAGGACTCCAGAGTGTCTTAGCAAAGACCTCAAAGTTCCTCAAAAGCTCTTCTTTCTTTGGCCTGGGTCCTATGTCAGGCAAAAAATTCCTTACGTATTGTGGTGAGTGCGGGGTTGTCACAGATAAAATTTAGAATGTCCACTGAGGTATTAGAAGTAAAATGGAATAAAAGCAAAACAAGTGTTCCCAGCAAACTGCTAATATCATAGGACTTGCTTCTTAATGGTCTCATCGATATGATTGATCTTTCCATACAAAGGACCTGAAGCAAGTATCAGAGATGTCTTGACTGCGGTTGAAGGAATCTGCAGTTGAGTCCATCCGGTTGATACAACCTTTCTAAAACTGTACGCTTTCTTCACGGGAGGCAAAATAGTCCTGTTTTTATACCCTCTGGAACTTTTGTAAAAGCTCAATCAATTAACTTGTTTTGAGCTCAGTAGCCACACTGCTTTAAGTGGCTTCTGTTTGCTATAACTGTTCACTTTTCAAAGGGAATATCTTATTTTGTGGTAAATGGTATTCAGTTTCAGGCTATCTGCTTCTTTAACAGCAGAAAAAAGTACCTTAAGGAGATGAACATGTCTTCTCTTGGCTGGGTCTGCTGTGGAGTTTCTGATAGGATATGAATGTGAATTGGCTGGCTGAAACTCAGTGATGAGGGCAGACCAGGGGAAGCACCTGGAAAGGTAGGGGAGAAGACGTGAACTGTCTTTACTCCCTGGCTGAGACTTATATGTCTGAAAGAGGGAGGTAGTAGATCACCGTGATACACCCCCCACATCACCAGTGCCTTTTAGCTGCTCCCATCCCATGCTGGAGTCTGAAATCCCTGAAGTCAGACCATGCAAGCTGTGCTCCCAGCTGCATGGGCAGCACTGAGACACAGGAATGGACAAGAGAGAGATTCTACCATCCACTGTGACTGTTTTCTGCACATTTGCCCTTCTGCTAGCAAGGATGTAACATTTCTGCAACCCAATGCAAAATCTGTTTGAAGTTTTTTTTTTACTTGTGTTGTGTGCTTCTGTTAGATAATCTAGCCAATGAGAGGAATAAACCATCTTTCTATTGGTATGTCAATTAAAAGTTTGTAAGAATTTCTAGGATAGTTCGGCGTAGTTTGCAGGCAGATTGAGATCTCAGTTTGGTGATGTCTTCTGCTTATGTGAGCTACTATTCTTTTAGCTGATCTGGATCGTTTTCTCTCTCTCTTTTTTTTTCTCTTCCTCTTTAGTGTTCCATTCTAGGCATAATGTTTTTGCAGATGTTAGGAGACCAAAAGCCATGGAAATAAATCTTCCCCTCAGAGAGAGCTCTGCCCTTCCAGAGTAACAAGTGTTTTGTAGCTGGGGATTTGCCTCTGGAGTGGGACTCATGCTTTGCATTGCCAATCAAGCTGGGCAGCGCTTGGTGGAATAGGAACTTGTCTCTGACTCTGTTCTGCAAAGAGATGTTTTCCTTATCTGACTGCAACATGGACACGGCACTGACCTCTGTGCCTCTGAGCAATTTAGTTGGGCCATTATTTGTTTGCTTGATTCTGTGACCTGCAG
Seq C2 exon
GTGGAAAACAGGGGAGTGGGGACCCTGCTCAGCTACCTGTGGTGGAGGCACCCAGACTCGCTCTGTTTACTGTGTAGCATTTGATGGTCAGAACTCCCAAGGTGTTGTGGACAACGCTGAGTGTATGGCCTTTGCACAGCAGCCTCACAGCAGTCAGCCCTGCAACAGGAGACAGTGTGCAACCTGGAGCACAGGGCCCTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315:ENSGALT00000015156:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(71.2=86.0)
A:
NA
C2:
PF0009014=TSP_1=WD(100=84.3),PF0009014=TSP_1=PU(13.0=10.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]