GgaINT0054705 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25811105-25811977:-
Coord C1 exon
chr5:25811946-25811977
Coord A exon
chr5:25811146-25811945
Coord C2 exon
chr5:25811105-25811145
Length
800 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CAACCCATCTCTCTTTGCAGATG
3' ss Score
11.33
Exon sequences
Seq C1 exon
TGCTGACGCTGAGCTCTGCCTCCCGCACAAAG
Seq A exon
GTGAGTTCATCTGTCCTCACTGCAGGCGCCAAGCAGGGCCCTCAATCTGTTCTGCCTCCTCTCAGATTGAGCTATTTTGGGTTCCTGCCATTGCTTTCTGGCCCATCCTTTCTCTGAAGTGCAGCCAGGAGCCCTGCAGCTAATGTGCTAGGTGGGGGTGGGTGACCCCAGAGGCAGGCAGCACAGACCTGACGATGATTTGTGGAGTGGTCTGGCCAGGTGCTCCCCCGACTGCCGAGCTGCACGGGGAGGGCAGGAAATGGCATGGCAGAGGGGTTAATCCCCCACCTGCAGAGCTGTGTGCTGTTGGCTGGGTTGGGGGCTGTTTCTGCCAGGCCGCAGCAGGAGCTCGGGAGGTGGGAGCACAAGGTCAGGGGCCTCGCTGAACTGAGCAAATGGAAAGAGTTTCCTGGAGCTTGAGCAGAGCTCAGAGCCTGGACGTGTGAGTGACTCACGGTGAGAGGCGTCCTGGCTGCTGGCTGACACCCAGATCTGCTCCTGCTTCCATCGCAATTCATCCTGCCCACGGGCAGAGCCCCTTGTTTCCCTGCACACATCTCCCTGGGGCTAAGCTCCGGCTGCACCCCCAGGTACATACCTCTCTTCTTCCCTCACATACCTGAGGGTGCAGGAGTCACGTAAAATCAACCTGGCCACTGTTCAGCCTGCGAACAAGGGGCTGGCACCTGGAGGATCTCAGCTGACAGCTTTGGGTCTCTGGTGCCCAACTCTTGGTTCCCCAGGTAGATAAATAGCATCACAGATGGAGTTTTCTGATCCCAACCCATCTCTCTTTGCAG
Seq C2 exon
ATGACCTGATAGAAGCTGCCAAGACTGGTAACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(13.7=83.3)
A:
NA
C2:
PF127962=Ank_2=FE(17.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]