MmuINT0048923 @ mm9
Intron Retention
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91774973-91775269:-
Coord C1 exon
chr2:91775238-91775269
Coord A exon
chr2:91775017-91775237
Coord C2 exon
chr2:91774973-91775016
Length
221 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGGGCAGCTCTTCTGTGCAGGTG
3' ss Score
5.22
Exon sequences
Seq C1 exon
GTCAATGCAGGGGGACACTGCACTGCCCCAAG
Seq A exon
GTGAGGCCTCTTCCCCTAAAGCCCTGCTGCTTTCCCTGGTCATATGTGGGAGGCTCAGTGGGGGGTCAGGGTTCACTATAGCTCACACGCATAGCCATTGAGTCCCGTGGGATCGCTTTCCTGCACAAGCCCAGCCTTTGACATACACGCCCCACATTGTTCACACATCAACCCATGTTCAGCCTCTGACCTCAGGGTTGATGGGCAGCTCTTCTGTGCAG
Seq C2 exon
GTGAAGAACTGATTGAAGCAGCCAAGAGGAATGACTGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-Dgkz:NM_138306:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(11.6=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: