GgaINT0054962 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:15866983-15867326:-
Coord C1 exon
chr5:15867283-15867326
Coord A exon
chr5:15867184-15867282
Coord C2 exon
chr5:15866983-15867183
Length
99 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGT
5' ss Score
9.94
3' ss Seq
TATCCTCTTTTGTTTTACAGAAT
3' ss Score
11.26
Exon sequences
Seq C1 exon
TGAATGCACAAACCATGGCAAAATATGCAAATACGATGAACACG
Seq A exon
GTATGTTGAAAAGGTTGTTTTCATAAGAGTACAATGCATTTAAAGCACCCTGCTCTGTGTTTTAGATACCAAAGAGTACTATCCTCTTTTGTTTTACAG
Seq C2 exon
AATGTGTCTGCATTTATGAAGGACGGACATATAACTATACAGACATGATCTACAATACTACAGATGGCATAGGAGGATGTATTGTTGCAACTTGTGGTCCCAATGGAACACTTCAAAGAGTTGTGTATGACTGTCCAATCTCAACATCACCCACAACACCGTTTCACTTCAGCACTACACCACCTGCCACTGCTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGCACAAACCATGGCAA
R:
CAACTCTTTGAAGTGTTCCATTGGG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]