GgaINT0055899 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:13179344-13184140:+
Coord C1 exon
chr5:13179344-13179389
Coord A exon
chr5:13179390-13184060
Coord C2 exon
chr5:13184061-13184140
Length
4671 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
AATCAATGCCCATTTTGCAGGTA
3' ss Score
6.25
Exon sequences
Seq C1 exon
GTTGGAGGCTATGTTGTACCATTCCTGGAAGGATGTTGCAAAACAT
Seq A exon
GTAAGTGATTAATGAAACTCACAGATTTCCACTCATCGAGACTCACCAGACTGTCTGATCTGTTGTTACTTTAGAAATAAGTTTGATTCTTTACTGTATGGAAGCTTGATTCTAGTCTCAAAAGATGTGTTCTTACCAATCTCATTTATGTGAATACTAGTGAAGTTAGTGCAATTAAACCAGAAAAAAGTGGTTTAGCACTGAAGGCTTTACTCCGGTGACATAAACTGTGGCTGGCCAAGTCTCTAACTTTGCTATGTTGAGTACTTTCTTCTTCTCATATAAAACTCTTAAAAATAATAATTACTGCATCTAATGCTACTGTATTTTGGAATGTGCCCCAAAGAACGCTTCAGCTACACTCACATCTTCATATCTAGTTAAAAAACAAAAAAGGAATTGATCTATGCTGTTTATAAGTTAATGCTGTAAATACTTAACTAATTGTAATATAGCCCTGGATTCTGTTGATAGACATATTTCAAAAGCTGTCAAGCAATGTCTTTATTTTAAAGAAAAAAACCCACCTTTACCTTGATACCAAGATCTGTTTTGATGTCTATGATAAAGGGGTTCTGGAAAAAATAATTCTTTACAGAACGTGTTCTAAATTTGCTAATTCTCAACTACGAATCATGAGCTAAATACCCTTTTTCTTCATATTCTGGTATGTAACTGGGCCTCATTCACTGCATGAGCCAAACACCTAACCTGAAGAATTTAAGAATTAAGAATTTAAACATCTCACCTGAAGTTGGCAACCTTAATAGCAATGTAAAAGGAGATTTTTTTTTTAAAAGGGCAGTATCATATTATCTTTTAAAAAAGTACAAAATTCTCACTCTATTTGCATAAGTGGGTAGAACAGTGACCTAAGAGCTAAGGATAGGAGGTAAACTGTAGGAGAGAGTTGGAGAAATGTGCAAGTATTTCCTACTGGTTGGGATGGGACTTGATCATGACTACCAGATATGCCATCATGTGCAGAGTTACTGCAGTGGGATATATGTAGTGAGTCAGGACACACTTTTTCATTTCATCTGTTATGTAGTACATGCTGTAGTACAGAGCTTCTTGAAATTGCAGATCTGCTTTTTTTTGATCCCGATCACTGTAAGGTAATAGTACTACAACTTCATGATTTTTCATTGTAATGGACCTGTGCTTTAAGCACTTGTTCCTAGTTGTTTAGCTGACTCTCCATTGGCTCTTTGAGATTAGTTTTTGAGATTATCTGACATTACTGTTCAATGCCTTATTAGCCGTACAAGCCAGTTTCTGAACAAAATACTTATTAAGGCAGCTAAAAATCTATTAAGCTGATTTTGATTTTCAGCAAGGCAGAAGATACTCCTAATATATTTAGAGAGGGATCATAACCACACTCTTAAATAATTAAGACAAAATAAAATTTTTAGTGTAGGGCATGCATCACAAAAAGAAAATTAACCACTTAAAAATAGCCACTGACGTTGGAGATTTGCGTTTACGAGTATATTCATGTCATTGATTTTACAGCTGTTTATAGATAGCATGGCCAGTGAATCATGTAGTTAAGTCTGACTCAGAACAAATCTGGCATGAGAGCTATCAGTCAATAGTTACTGTGTGACATTTTATGAGAAGGGTTATCAGCATGTCATTTTCTTTTGAAATATTTTATGATTAGAAAACATTGTGATGTTTGCTTTCATTTTAACAAATGAAGCCCTCTGTGTAAGCCTCAAGAGTTACATGAAAATCCAGAGAGTTTTTACCAACATGGCTAGAGAAAGAAATGTACTATTTCTTTCTTGCAGCCCCTAAGAACAACTAAAATCTGGGATACTAGGTAGTCTCAGTTATACCGACGTAGATCAGAAATAACTTTTTTGAAGACATCTGGACTTGAACCACTTAAACAAATAAAAGTAATAGATCCATGATGTAATACAGCATCCTAAGCAGTATGTTTGAATTGTTCCTGGTTTTGACAATATGCATTGCAAGTAACACACAGACTTTTTAATGTTGAATTCCTTTCTCAAATATGTTGAAATCTAATAGCTTCAAAGTGTTTCATATTGATAGGGAATCCTTTATAACATATAAGCTGTTCAATGTGTAATATTCTTACCAGGTTCTTCCGCATCAATGTTCCTCCCATTCCCTGTTAGCCCAGTCACTCCTACAGCCTATGCTAGCTGTAATAAAGGTACATTCTCCTGAAATTAGCAGAATCAACCCAAACAGCATCATTGTTGATTTCCAACAATGTACTCCCTGATAGGAGCATCAGCCCTTATGTCATCCGGTTATACCAAAAGCTGCAGTATAGCAGAGCTGCTTATGGTTCAGAATGGCTCACATTGTGGTTTGGTTTTGTTTTTCATTTTGCACTGCGTGGGCAGTGCATTGTTGTTAGCCAACAATATACTGTTGGTAGTAAGCACGCGCATAGTCTTTAGCTTGCTGCATGTGTAAATTATTGTGTTTGAAAAACGTACGCTAATTCCATTATGTGTATTGTGCTGTAGAACATAGACACTAATGGCTTTGCTTGTTAAAGTTAGTTTAATAAATAACTTTTTTGCATATTCTGTTCCATACAGCTTTGCCTGTGGTGGCATATTCAGTAGAAGTAGCTCATTTCTTTCCCTGCTGTAGTAAGGATAGTTAACTGAAAATTGCAAGCCTGTGCTTAGTCCATGAAAATTGGAGATTTTATTTGTTATGTTTAATAGAGGATTATAACTTCTGGTGTTGTAACATGGTATGAATGCAGATAGCTTGGCATTTGTTTTGTGAAAACATCTCTCCATGTTTCTGTAAGAGAAACAATGTTGACTGTAATTTTGTACGTTGCTGAGCGACACATATTTCATTAACTATGCTCCTGACTCTAGGAATACTACATTGAAGTACATATTACTCCTTTACACTGACATCACTTTAAATGACAAAGCTGTTGAATCAACTCAAAAACAAGGAAGGAGTTTTGACCATAAAGAACACGAAAAAGAAATTCATTAACACAACCCACATAAGAAAATTTTCACGTTTTGAAAGGCTTTTCAGAGAAAAGTATACCATATTTAGACCTCATTAAAAGCCACTGGACATTAAAATACATACATGGAAATACTTTATATATTTATTTCTTTGTGAAATGTGATGCAGTTTTGCTGTAGCACAGATGAAGTCATAGCCACAGCTGCACTGAGTTCCCCATCCTACACACCATGTGTAATGTAAGAGAAGAAAGTACATGAAAAAGACTGAGAAACACAAAACAATGGTGAGTTTTTTATATTCAAAAGTATTTTTTTCTTCTTTTCTCAATTTCTTTTTTACCTAAGCAAATATAATTCAGTAATAGTTGAGCACTAGCAGCTGTTTCTGATTGTAGATGTTTATTTCCTTCCAGGAAAGTTCATTGCTGTCCTTTCTTTCAGATTCTAGAAACTTATGCAAGTTAGTGCAAGCCAATTAAAGTAATAAGAGTAAGCTCTTAACTCATGCAAGTTAAGAGTCAGTAGCAAGTCCTAAAGTCATTATGTTGTTTGAAAAGTGGGAAGAAAAAAAAGAAAAGAAAAAAAACACCCCCAAAAATTCACAAAAAAATGTTTCTCTTTTGGAAGCAGTTTAACCTGATTTAACAGTGATTAGAGCAGGAAACTGGACGTTAGGCATTAAATGCAATAAAACTCTGTCACAGTTCAGTACCAGGCACCGGTAAAACCAATGAGTCTTTAATTGCCCTTGCTTTTCTGGAGCTAACACCTTGGGTTTGGTTGGCTGAAAGAGAATGCAGCTCCCTAAGTAGAGAGATGTGGGAGTGCATCATGCTGTGTAAAATCTGTTAAACTGTGGAAGCTTTTATAGTGAAATTAACTGTTTTTCTTGCAGGTCTTCAATGTGATGTGATTTCTTCAAGATAGAGAGGATCATCTTGAGAAAATACTGCTCTTTCTGATTTCAGACAACTGAATTTTAGACTGAACTTTGTTGCTTTTCTTCAAAATGCCCAGGATTCTCTCCTTAAGTCAAGTTTAACTGCTTTTATTTCATTCCTTAATTTCTTTATATCCTTTTTAATTTCATCACATACTTTGTAAACACTTTTGTGAGATAAAATGTGAACAGAATGCAAATGCAAATGTAAATAAAACATTTAATTTATTCATCTATGGTCTTTTTCTTATTTAATAAAAATATACAGAGCCTGCTCCCTCTGCTGAGCCCTAGTTACATTCAGATCCTGGCGTTGTGTTCATTTTAAAACTTATTTATAGCGCTGGAATTTGGTTATTACTATTAAGATTTTATTTATTTATTAGAAAATGCACTTTATGCATCTTGAACAAGCCATCTCACAGTAATTGATCATTTTTACAAAATTTTGTGAAAGACAGCATAGACTTGCTCTGTAAAAGGCTTCTGAATGAAGAATAAACTTTCAGAGACACAAGATACTGGAGGTACAAGGAGATGTGTTTTAATGAGTGAACTAGAATGTTTTAAAAGCAGTGATTTCAATGCAAAGTATAGCTAATGTCACAAAAACTTTTGCAGAGATGTATTGGGTATATTCTTTGCCTATTGACACCATAACGCATTCAGGAATGTTCTTATCTCTGAAATGTTAAGAAGTTTGAGCTCATATTTTTTCAATCAATGCCCATTTTGCAG
Seq C2 exon
GTAAGGAAGATGGAAAATTCTGTAAAAAGGTGACTGTTAGGATGACTATCCGCAAGAATGACTGCAGGAGTAACACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208:ENSGALT00000010023:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]