RnoINT0106093 @ rn6
Intron Retention
Gene
ENSRNOG00000010983 | Otog
Description
otogelin [Source:RGD Symbol;Acc:1306610]
Coordinates
chr1:102323293-102325577:+
Coord C1 exon
chr1:102323293-102323338
Coord A exon
chr1:102323339-102325497
Coord C2 exon
chr1:102325498-102325577
Length
2159 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
CCCACTCTTCCCCGAACCAGGTA
3' ss Score
7.74
Exon sequences
Seq C1 exon
GTCGGCGGCTCTGTGGTACCATCTTTGGAAGGATGCTGCCGGACGT
Seq A exon
GTGAGTGAGCATGGCGGAGAGCCAGGGTTCAGTATGCAGGAGGGAGGAGGCGCAGATAGGTGGCCAACGGGCCGAGTTACCAGCCTGGTATCTATGGGATGAGTAGACAAAGTGATGTCCAATCAACTGAGGGTCATGGCAACGGCACAATCAGGTAGCCAGAGGTTACATGTTCATGAACTCTGTCCCAAGACAAGGCCTCTTCTTGATAGAGATAAAAGACAGTAGCCACTCCCTGAAGGAAGTCCTTCACTCCTCAGTCACCCTGCCTCTGTCCCAGACAGACTCCAGCTCACATGTCCTCTTTATTGATTCTGTGACCCATGAGCCCTGGTCTCAAAGCTGCCTCTTTGGGGAGACTTAAGTTTCCAGACCTCTGCTGTCAGAAACCTGTCTCTCACTTTGCTTCTGGAACTCTGAATTCTAGGCACCAGCATCTTACATGTAACAGTAACTACATGTGCTTGAATGAACCCATCAGCCTCATGGCCTTTGCTCACAGGCCTGCCCTTCTGTGAGGCTCAGACCCTGTGTCCAAAGGACCATAGGCTTCGAGCTTCTTATGTCCACAAAACTTACTACATGAGAGCTTGTCTCCAGACCTTGGCTGATCCATGACCCATAACCTCATGCTCCCTGAATGTTCCGTTTTCCCCATGTGGCCTGAATCCTATGCCCCTCTCCTCAGTCTCCTAAGGGGCTTGTTTCCTATGGTCACTATTAGACCGACCACTCCTCCATGGGCTAGTGTCCACTGCTGCTGTTACTTGTCTCAGAAGCACATAAAACAGGAAGCAGGCAAACACATAGCTATTCCCAAGTGTCCCTTCTAGGCGTTCCCAAGCTCTGAGTGTGATGGAAAGGGAAACTCTTTGCTTCTGGTGAAGTCCATTTAGCACCACATGCATGCTGGGTATTGAGAGACATCTCCTGGGTTGTACTAGCTCCCAGTTATCTGGTACCCACCCAAGTCCAAGGCCACCATTCCTCTCCCCGCACTGAACACATAGTCTTCCTCACTCCAGGGCCAACAGGTCTATGGCAGCCCTCGACTCTCCTGCCTGTCTGTGCTGAGCCTCTAGAAGACATATAATGAGTGCCACCGTGTGCCAGCCACTAGCCTGAGAACTGTGGGTGTGGCACAAGAAAGCGTTGTGGCTGTCACTTTCATGGATGGAAGAACAGGCGTAGTAGATTATAGGCTGGAGGCTGTGAGTTCTGCAGGGTCCAAGTCATGCAGACTTTGGTGGGGTTTATCACACCAGCATCCACAACCATCCATGCCTCCATACCCAAGCCCCAACACCGTCTGCCATCTCTGGGTACACCTTCTCACCTCCTCTGAGCTTCTGACGTATGAAAAAACCTTTTGGATTGAGAATAGAAGTCACACGACTGCAGGGAGGAAGGCCCCAGAGCTTACAAGCTTCGGTCTCCCTAGCACAGGTAGAGGCATGCCTCTGGTCAGACAGATTGTGCCTGGGACAGAATAAACCAAGGAGGCCTGAGGAAGGGAATTGCATTTTCCAGAAGAGGGGCTCTAGAAAGGTCTCGGCAGGGGTAGGGGTGGAGGGTGGGGGAGATTGGAGAAAACTGCTCCAGATGAGGCCAAAGAGTGCCTTGTGAGTGGTTGTCTGTCTGGGAGAGATGTGACCTAGGAAGAAAAAAACCTCTACACTGCCAGTTTGCACCTGTGGCCCCTGCTTGAGAGCTGTTGAATCCCCATGGATCTTGCCATGTGGAACATCCTGTTTGCCATTCATGGCAGACTCTTACTGCTAGAGTCCTCTCGGAGCGGAAACACTGATGCTCAGAGGAGATGTGAGGATGTACACAGGGTTTCTAACAGGGGTGACAGGTAAGTGCTGGGGCTTGGGTATGGAGACAGCCTGCTCTTGTCTCATATCTTATAGCACAGAGACCTGAGGCTCTCTTTAACCACCCCATGTGTCTTCCTCTGTCTCACTTGCCTCTGACTTCCTTGGTCCCACTTCCTTCTAAGACAATGGGTTAAAAGTGTTTCCCCTTGCTGGAGGGGACATAAATGTGTGGGCACCAACCTGGAAAAGGAACACTCTCACATGACAGTAACTACCCCAGGCTGGCCCATCTTGATGTCAGTCTGGGACATGACTCTTGCCCACTCTTCCCCGAACCAG
Seq C2 exon
GTAAGGAGGATGGGCGATCTTGCAAGAAGGTGACCATCCGCATGACCATTCGCAAGAATGATTGCAGGAGTAACACCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010983:ENSRNOT00000068434:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]