GgaINT0056355 @ galGal3
Intron Retention
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52460148-52464519:-
Coord C1 exon
chr5:52464424-52464519
Coord A exon
chr5:52460297-52464423
Coord C2 exon
chr5:52460148-52460296
Length
4127 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
CTTTATTTCTCCCTTTTCAGTAT
3' ss Score
10.24
Exon sequences
Seq C1 exon
ACAGCTTGTTTCCGAGAAGAGAGAAATGTCTTGGTGAATGGAGATTGCCAGTGGATTACTACATTGCACTATGCCTTTCAAGATGAGAACTATTTG
Seq A exon
GTATGTTTGATTCATCAGCAAATAAAAGCTTTATGTTATGAAAGAACTTTATTTTTTGTACTCTTAAGTGTATTGGTGCAATAAATCAGTCCACCTCATGCCTTGCAGCTGTGTTTTGGCATTCTTGTTTTCTCCTTGAAGAAATACTTCAAAGGATTGACTGTAACTGTAAGAGAGTGAGGAAGTCATGTAGTACTATGGTCTGCAGAGGTTTAGCTAAGCACTTTTTAAACTGATCTACTCTTGCATAAATGTATCATGCTTAAGTTTGTTTTTGGATAGCATCGCAACTAATTTACTTGGGGGAGATGTTAACACAGTGAAAATAAGAACTGTTTTAGTACTAAAGTTTCAAATTCAAGACCTTGTTTAAAAATGGCAAAATTAATTAACATTTTATTTTAAAAGGAGTGATTAAATTGTGATTTTAAATAGACTAAGGAAAAAGTATTTCAGTGAAAAGCTTTTGAAACCAGCAGATTGGTCATCTGAAGTGATGGTTACTGGAAAATTGTGAGTTACTATAACATACAAACTGCATTTAGCTTTATCGCACGAGTCAGGTATGTGCTGGTTGTGGTTATAAACAAGAAACGAGCTTATCGATGGAAACTTTCCAGTGAGTTCAGGAACTAAGTATAAAAAAATCAGATAATCCTCAAAATTTTTGAGAGCTGCCAGTTTGAGTATCATCTTAAAAAGTATTTTCACAGTGACAAGCACATCAGGTCTCTAGGTGCTCAATTACAGTCTTATTTCCATTTTATTAATACTTTGTGATAGATCCATATTTTCCACCCTTCAAAATCTAGTTATCTGTGGAACTGCCTCAGGAAGATTGCTCATAAATTCAAGTTCCCTCAGAATCAAACAGCCTTGAGACTTTTATAAAAATAACTCAAGATACTGTAATGTAATATTTCCAAGCAGCATCTGAAAATGGGGCTAAGATTTTTTTTACCTGCAGTAACAGAAAGCAATAGTAATGACAATGTAGGGAGAGATCTAGTATTGCTAATACCATTTTATGAAAACCCGCTCCAAGTAAGCTGTAACAGTGTAATACATTTCCCCAAGTTCCCAAAGGCATGTAGATGTTGAGGTTTCACTTGACAGCAGAGTTTAGACAGCTAACGTCTAATTTAAGATCCAGAATTTAGAAAGCAACAACTCTGCCTGGCAGCTGAAGTCAGCAGATTGCCAGCTTGCCTGAGGTCTGGTGCTGCATGTGCTGAGATGCTAACTTCCAATTTGGTCTGTTACTCAGCATCCATCTCATGTAAATGTCTGGTACTAACAGATGAAGTGTATGTGCATTTTAGTTACCCTATTGTAAACGATGTTTGAAGAAAAAGGCAAGTTGACAAAACACATCAGGAAGTAGCTTTCATCCGGAAATGTGGGCTCTGGTCCAGGCTCTCTTCCATGCTGTCTTAGTAGTTAACTTGTCCAGGGCTGAAAGATCTCTGTTCAGACCTCTGCTCATCTTAAGTAAGTTTATAGTCATATTTTTCCACATCTCAGGAGAGTGTTGCCACCTTACAGAACCTGTTCAGTTTGGCTTTACTTTTCAGCTTTGCTACTCATACTTACTCTTGTGTAATGGACCACAAATCTAAGAAGAAAATGAGAACAGACACCAGAGCTTGAGTTGCCAACCCGGAGTGGACATCAATTCTCTCTGGAAGGGAAAGCTCTTGATCCTTTTTATCTGCTCCCATTGATATTTGTGCAGTATAGCTCATGATTCTTATACTCGAAACTAGAGAGTGTCATTTTACACCTAGGGCTTTACCATCCTCCTCTGGCTGCATGAAGTAAGACTTCAGAATGAGACAAATAATGAGATGATAATATATTAAGACAGAAAAGCAGTAGCTGCCATTGGAGTCTTTAGAAACAGTTGGGGCTTTATTTCCTCTCTTTAGTATCAGTAGAGCATGCGATGATGGAGAAATTAAATACAAGCATGAAACACAAAGTTCTATGAAGTGTATTTGTTGTAGAGTTCGATTTTCTGGTTCTGCTCATCTACTTTTTAAATGTGGTAGTTTTTTTTAAACAGCCAGCTCTTAAGTGACATCATGCAGAAATGTTAGCATGACTTTTTCTGGTTCCTAGAAAGCTTTTTGCAGAGACAGTATGAGTCAAGATGGATTAGTAAGCCTTTGGTGATTCTACTGAAGTAGATAGTGGGTAGGTGAAGCTTAGTCTGTGCGCATCAGAAATGCGTATGTGACCTGAAGTTCATAATCTAAATTTAAATCTGTGAGTTTTTGTGTGATTTACCAGGAATTCAAGGATAAATTCTTTCATTCTTATTCATTACAAAAGATTTGTGTTTTTCTGTTGCCAGCCTCTTAAAGTTTCCTTATGAGTATTTGTATGAGCATTTTGATGTCTTTTTTTCTTTTCCCCTTTGATCTCCAACCACCCTCTCTGTTTGATGTAACCACTTCCCAGGAAGAAATGTAATATGTCTAAATTTAAGAGTCATAATACCCTTTATTTTAACCCTATATGAAGAGAGAAGTGCCTCTGGGCAAGAAGATCGTTGCGAGGAAGATGATTAATAAAATTTGACTTTCTTGTAGAAGAGGTCTCAAGTGTTCCCCTGTTCCAGGAGCCTCATTTCATGGGTCAACTGAGTTCTCGCTGCCTTATGAACACTGTGGGAACTGAGAAGTGTATTACCGTGTCTTCCTGTCAGGCAGTCTATTTCAGCTCCCACAGAAGGCTCTGTAAACTCTCTTAACCTTACTTTTGAAAGAAAATAGCATGATACAATATTCATTTTAAAACGCTTCCCGTTCCCGTCTGTAGCTTTTCATTCCCAAATGTAATTGTTATGTGCATGTGGTGTTCCAACAAACATTTAAAACTCCTTATAGGATTGTGCAATACATGCTGGTTGCTTTCAACGTAATCTAATAGGCAAATTTCATGATCTAAGCTATAATGAAATGCAGAAAAATATCAAAATGTAGACCTTCTCAAGTCCTCTTCTAAGTGAAAAGATAGTGAGGAAATAGTATTCCATCCCGGGAATCATGGAACCAAAATGTTCAAGTCATTATGCTTTGAGTGGTGCTCTGGATTTAGGTGTGTAATGCTGTTTTCCATCTATAAAACAGAGATTAGGTTATTTCCTAGCAAGTCTGAGTCCTTTACTTTCACATGATACCGTATCCATGTCGGTTCTTTCCAGAGATAGAATAACGGTTGATTGGCCTTGGAGGTGATTTACTTTTTCATTGAAATACATTTGTGTCCAAGAACATGAACATTTGATTGTTAAATTTCCAACTGCTGTAGTGCCTCTGGCATGGCAGCACTTCTGACTTGTGAGCAATCCCTGCCACGGTGTCATGGAGCTCCTGCCAGCTCTGTTATGCATCCGTGATGTGGCATGTGTCAAGATGAGCACTTGATGATACTGACGTACCAGGTTCCACTTTTGGAACCACTAGTAGTACTGAAATGTACCAAGACTAAAATTTGTAATGAAATGTTTGTTATAAACTAAGCTGCATCCATCTGTTGAGCACTAATGCCTTCCAGAAAAGTTTTTAGTGAAATTTTAATAAAAAGTCTTTGAAAGAAGCAAGGATTGTTACTCAGTGCTTCTGTTAAGAGTTTCCTTCAGCAAATGGTTTGTATGATATAAATATCTGACATTCAAATGCATAGTTCCTCAAATTTTAGCACCTGATAGTAGATGTGCAATTCAGGCAAGAAGCCGCTTGCACCAACTAAACCTTAAGGTGTTAATCCTTATTGTTTCCCAGTCTGAAAGAATTCTATTCTGCAAGTGGTATCAAGTATTTTCTGTTCGTATTTAATGTAACACTGATGTTCTCTTACAAATTCCTATTTTTCTTTTTCTTCCTGTCTCTTCTGGGAATTTTCAGTGTAAGCATTGATGACCTACCTGAATTTTTGGTGATAGTAGATTTTTTTTCCACTGTGCATCATTGTAATAAAGACTGAAAGGACAGAATGATTTTCTGTCACCGTTACTGGAATTATTCAGGAGTGTCGTGTTTCAGCAGTTAACTGATGAACTTCATATTTTTTTCTTAACAGCTGTGTCTCAGTATGTAACCGCTTTATTTCTCCCTTTTCAG
Seq C2 exon
TATCTAGTGATGGACTACTATGTTGGTGGTGACTTGCTGACGCTTCTCAGTAAGTTTGAAGACAAACTTCCTGAAGACATGGCAAGGTTCTACATTGGTGAAATGGTGCTTGCAATACATTCCATACATGAGCTGCATTATGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432:ENSGALT00000018644:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]