RnoINT0032665 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135786660-135790540:-
Coord C1 exon
chr6:135790445-135790540
Coord A exon
chr6:135786809-135790444
Coord C2 exon
chr6:135786660-135786808
Length
3636 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
3' ss Seq
CTCCTCTTTCTGATTTGTAGTAC
3' ss Score
6.32
Exon sequences
Seq C1 exon
ACAGCTTGCTTTCGAGAAGAGAGGGATGTGCTGGTGAACGGTGACTGCCAGTGGATCACTGCGCTACACTACGCCTTTCAAGATGAGAACTACCTG
Seq A exon
GTAGGGCTGCACGCATGCTCAGGGCACCGACCCAGACCCACGGGGACTTCCCTCACAGTTTGGGCTCCTCCTTGCTGCCTCTTAGAAAAGAGTAGCAGTGTAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAGAGTAGCAGTGTGGAATGGTCATTGTCAGTACCTAGCCTACGCAAAACTGAGGGTTTGTCTCAGTTCAACCAGGGAGGATGCTCAACAGGAAGCTTCTGAGGTCTGTGCAACATTCTCCCCAAACCATTATGTCACTGAATGACTTGGTTCTTAAAACATTTTAAGTGTATAAAACTTTTCTCTTTTTTTCTTTACTTTTGTGTTTTTCTGAATTGCGTGTAACAAAAATCTCAGCCGTGCGGCAGCCCAGCACGTCTGGTGGGCCCAGCACACTGAACGCGGAGGCAGTGGGCTCGAAAATTTGAGAGAAAAGCAGCAGCACCTGGGGATCAGATCCTTGGCCCTGGCTCTCACTGCACAGCTGTCTCTCCCTTCTCCCTTCTCCCTTCTCCCTTCTGTGTGAGGGGCAGAGGAGCTAAGCACCCAGGCAGGCCTTGTCAGGGTTTCCTGGGTGCTCCTGACAAGCCGGCACTCACTCACGATATTGGCGGGTACTTTGGAAGTAATTCCTTCCTTCCTTCCTTCCTTCCTTCTGTCAGCTTTGTGGCACACATGCATGTGTAGAGTTGAGTGTGCACAGCCGTGGCTCGGCCCTTGGGCAGCCAGTGGAGGTGCGGCTGACGGTCCAGAGCCCTCAGCTCCTCAGGTCCTCAGACTCCTTGTTTAGGAATTCTAGGATGACCTCAGGCTTGAGATTGAGAGAAGCAGGGTTGTGCTTACCTCCCTCTAGCCAGTGCTTCTGCCTCAGCTGTGGACAAACAGGATATAATCGCTGTTGTAACGCAGCCTGCAGGTGGAGACCTGAGGCGCTTGTTTGCCCTGTGAAGCTCCTTGGTCAAGTATCCATTTGTTTGCAAAAACAGTTTTATTCATCTTAAAAAGGTTTCTTTCAAACATCAAAACCCCTGATCTCTGAACATCCAGGGTATGGGAGATGGTGTCTGTCATGTTGTTTGTTGAGAGAACTATGTTTTTGTTCCAGTAGAGGGCAGCTAGTGTCCATCGGTATCCTATGATGCACTAGGCCTCTGGTTATATTGGCCAGCCTTGCCAATCAATGACTCCCATTTTTTAAGCTTTTGTGAACACCCTCCTTTGATAACTGGGGTGTCTGGGGCACAGAGTGGGTAGCTATGAGACACAGTCCTTGCATGGTTGCCGTGTTAGGGTCCCTGTTCTGCTTTGCTGAGAAAAGTGGTTGATGTCCCTCAGTTCCTGATGGAGCATTGGAGGGGACACCCCGTAGGTCACATGCTCTTCTGACAGGATGGGACGGGAGTTTTGACAGTTTTGTTCCAGATTTTTCCCTCAGCTCAGTCATGCGGTGTTGTGTGGAGTATGTAGATGGGCGGCGTCACCAGCTGCTTTCCAGTCACACTCAGCTAGGAATCTCCAGGACAGATGCTGTGTTCTCGGCCGCTTTCTAGGATGTGGCAAGTCAGCAGACAAGCTGCCTCGGCCAGAGCATGTAGGGACTGTCGGAATAGAAGCTGTCTGTCCTGTGAGGGAGAGACGGCAGACAGGTGCCTCACATGGGAGCATGGGTTCATCTGTGGTCCAGGAGCTAGTGTGTGTTCTGACCACCAATTGGAAGAGTGTAGAGTAATTGACTTTACTCCCCACCCCGCTTGACAGCAGAGGTTACTCCAAGCTAAGTTTCTTTGGATCTACCCTGTAGACTGTTAACTTCCTCTCCGTGCCTTCCTCTCCAGGGAGCCATCAGCCACAGTAGCCCTCCTAGGTAGACTGGAGGCCTGGGAGCTGCTCCACTGTGGTCCTGACTCTCACCCTCTGTTATCTTGAGGGCTGCTGTTTCTCCTAGTTCTTCCCTCCCCCACACCAGAAACATCCTCCAGCAGCTGCTGATTCTTCCTTCAGGGTTTCTAAGCGTCTGCCCACAGACTTCAGTCCCCACCATGTGTAACCCCCAGCCTGCCTGAAAGGCCTCACCATCTCACTGATCCCAGACCCCCAGCACTGCCGAGCTCTTGCTACAAGCTCCGGCTTCGTCCCTCCCTGACCTAGGCTTGTTGTCACGGTTGCTCCAGCTGCCGGATTCGGCTCTTCCTCTTGGCCTCCTTACATACCCCGCCGTCCCTCTGGCCTTGACTCTAGCCCCCCCAGGATCTATGCTCAGTAGCTTCTGGTCACACACCGGGCTGTGTCACAGGCTTGTGTGCTTCCTGTGGTCTTCATTTAGTAATAGGAACCCTGCTGAACCAGGGCCCTGCCCTGGAGTGCAAGCAGGCTGAGTATTGAGGCAGGTTGGGTCAGAGGTGCTACATGATAGAAACGTAATTCAGCTTTTGTGCGGCAAAAAGTTGAGCACAGTAAGGAGACAGACCTGGTGATGCGGGACACTGCTCTTAAGGATGCTGTTGGTTGGGAAGCAGGCTGAAGCCTTCACACGCTAGGGATGCAGGAAGAAGGAAGGCTTTGTAGAGGGGATACCTGAGGAGGATTTCGGAAGCAGGGCGGAGAGCTGTTAGTTATACTCTTTAAGACCAGTTAGCTCGGGATTGGGGATTTAGTTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAAAAAAACCAACCAACCAACCAACAAACAAACAAAAAAAACCAGTTGTCTCCAGTTCGCTCACCCAAACAGGCCACTCAGACGGTGGCATGGTGATCACTGGAGTTTCATAGGGCAGGCATCCTCTGTCCCATTAGACTATGGGCCCCAAGTGTGGCATGAGAGGAGGACTGTGTTGAGGACAGACTGGTGACAGGCCTAGCTCAGGTAGCTGAGGGCAGTGTGTGGCTGTCACCCCAGGAAGAGCTGTTGCTGTATTCGATCTCAGTGCTCTTTTAAAGAGCGGTTTTCTTGCCACAGCTAGCCAGGCAGTGGTAATTCCTTATTACGGTGGTGGCTTAAAAGTTAGTTTGCCATGGAAATGAGACAGTGGGTTTGGCCATGTGTCCCAGAGCTGAGTAGTCCTAGTAGAGCTGCTGTGAACTGTCACCCTCCTGTGGCCTACAGCACCCTCCCATCCCACACCCTCTGATGTGGTGAGATGTGTCCTTTAGGGCCTCTGCAGCTCTGAGATGGTCTGTCAGCCTGAGTGCTGCGCGGTCGGGGCAGCGTGTCTGTGCTGGCACACTGTCCCTGGTGCACAGGTCCTGTGTCTGGACTAGTGAAGGGGTGCACTCAGCTTGTTGAAGAGAAGCCTGCTCTGCTCAGTGTCCTGCCCTCTGCCTGTGTGTTGTGTGTATTTGGATTGCAGCAGCGTGACACAGCAGGGTGTTTTCTGAGAAAGGTCGTCACTGCAGAGCTCGAGTCGGACAGCTTCCACGGTAGCTAATGGCAGGCTTCGGTGCTAAGAGCTATTTTCTCTCCTCTTTCTGATTTGTAG
Seq C2 exon
TACTTGGTTATGGATTACTATGTGGGTGGTGACTTGCTGACCCTGCTGAGTAAGTTTGAAGACAAACTTCCAGAAGACATGGCGAGGTTCTACATTGGCGAGATGGTGTTGGCCATCGACTCGATCCACCAGCTCCACTATGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]