GgaINT0058189 @ galGal4
Intron Retention
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8561938-8563658:+
Coord C1 exon
chr5:8561938-8562015
Coord A exon
chr5:8562016-8563544
Coord C2 exon
chr5:8563545-8563658
Length
1529 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
AATGCGTTCAATGCTTGTAGGAT
3' ss Score
6.68
Exon sequences
Seq C1 exon
GTTTTGCATCCTGATTTGGAAACAGCAGATTATGCCTTCCCTCCCCCACGAACAGCTTTATCGCACACAAAAATGCTG
Seq A exon
GTAAGATTTCTATGTTATGTCTGACTTTCTTAAGCAGAAAACTTGAAATTGTATACTGAATTTCTTTTTAAGAATTTTGACTTTGTTTTCTTTTCCTTATCCTCTATTATTGGCTGAGCAAGGAATTGGCAGCAGGACATTGCATTCTGCTCTGTAACAGCATTCTCCTGGGTTCAAAGCTTTTACAAAGATGTTTGTATTAACATGCAAGCACCTTATTTTCCTTTTAAAAAAAGTGGTCTTAAAAAGACTATTGAGTTAAATCTGTGCTTTCTCTGTTTCACAGACCAGTGAAGTTGCAAAATTTTGCTGGAATGGGCAAACTAGTTTTCTGTATTTCTGCCTATCTATCTGTCTATTATTTGGTAAATGTCTGATTTTAGAGACATTAAAAACATCCAATTTATAATTTTAGAGGAAATTTGGGTACAAGTAAATGTGGTAGTTATGTCAGTAAAACATAAGACCCTGGTTTCACAATAGTAACGGAAGGTATTTTACATTATATGTTTGGGCATTTTGGGAAAGGAATTGTATGGGTTTTTTAAACATTGTTATTGTTTTAATGAACCTCACTCAGCCTGAGCGAAACAATACATGATTGTAGTCAAAAAGCAGCCCGGAGAGTTATCTACTAAGGTCTAATTAACTTAGGTTACACATAGTTGTGAAGCCATGACAACTTAACAACCTAGTAAAGCTACTGGCTTTAGCTTGAAGGAACTGCAACTGGAGTTGATGGTCTCAACTAAAATACAAGAGCCAATTCAATTTTAAATTCCATCTTGGTTTTGTTTTGCAGGTGCATTCTGCAATAGTCTAATATTCTTTGCTGCTTTCAATTTTGAAGGAATTTTAACTTGAAAAATTTATTCAAACACTTTCTAGGACCTCAGGTTTTAGACATAGCTGTGGTCTGACTAGATACTGGCAGTGAAATGAAAATAATGTGGATGACACAGTATTTGATTGCAGTGGTTTTAATTGCATCTGGCCTGAAGATGACCCTGACCCAAGGCTGCCCTCATCTGTTCATATCAATTCCACTAGCACCTCTATGTCTTTGTAAGCACTCCCCTACTCAATTTGATGAAAATAAACCTGCTCCAGTGTCACCACCTCCAATGGCACTTTAGAGCCACGTTATCTTAAGGAACAAATCCAGGCTAAGATAGTCACTTTTCTTTCATTAGCATTGATTCTCACTCATGTTGATTCCTACTTGGGATTCACTGTGTGACCATCCAAACAAGTACATTTGCATTGCCATGACACAGACAGTGCTGTGCAGGTATGAGAAAAGAAAAACAGGAGAAAAGGGGTGGGCATGTACTAAATCTGGCATTGTAGTCCAGACACAGGTCAGTGAAACTGTAGCCTGGCATCAGATGGATTTGTACGTATGTACTTCATGTGGCGTACGGCTGCGCTGTTTCTGTAGGCATTCTATCAATTAGCTTCATATTAGCTTTACATGAAGTGTGGAAAAAATTATGAAAATGTTTTAACAATGCGTTCAATGCTTGTAG
Seq C2 exon
GATAAAGAAGTGCGAGCAATTTTCCTTAGGCTATTTGCACAACTTTTCCAAGGATACCGGTCATGCCTTCAGCTGATCAGAATACACGCTGAACCAGTCATTCATTTCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716:ENSGALT00000009170:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(0.1=0.0)
A:
NA
C2:
PF0345514=dDENN=FE(52.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCATCCTGATTTGGAAACAGC
R:
CTTGTGGAAATGAATGACTGGTTCA
Band lengths:
190-1719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]