MmuINT0139027 @ mm9
Intron Retention
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:117584966-117585881:-
Coord C1 exon
chr7:117585804-117585881
Coord A exon
chr7:117585080-117585803
Coord C2 exon
chr7:117584966-117585079
Length
724 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
GTTTTGCTTTGCATTTTCAGGAT
3' ss Score
10.28
Exon sequences
Seq C1 exon
ATCTTGCACCCGGATTTGGAAGTAGCAGATCATGCCTTCCCTCCTCCACGAACAGCTTTATCCCACTCAAAAATGCTG
Seq A exon
GTAAGAAATTTAATGTTCAAATTTGGTGCTTTTAAAGAGTACTGTACTTTTGTGTCTAGGTTTGCTGAAATAGCTGAGTTAGAAGAACCTTTAGAAGGTTAGGGCAATGTTCTGGCCTAGGAGAGGGGATTTGATTTTTTTTTTTTTCTTTAGGGGGCGAAAGTAAGGACAGCAAAGACATCAGAGCCTTAGTTATAGCCTGGAACACTCCCTAGCATAAGAATTTGGATTCTTCTCTTCTTATTGTGCTATATATCAAACCAGAGCCTTATTCCTGCTATGCATGTAATCATATTTCATTAGAATAAGAACAGATTTTTATAATTTGGTTAAATGTTGAAAGAATTTCATAAGCCTTTAAAATGTAATCTTTTGAGAGTTTTTCCCTTTTATATTCATAACCAATTTTTTTGCAGTTATAAAATAAAGGCCTTGGCATGAATTTCTTTCTATGACATAGTAAAACTGGAGACTATGCTACTCATTTTTCCTCTGGAAGAAAATTGTATGCTCTGGAATCCAATTCTCTTCAGTTCAGTAGAAAGAACAAACCCATTTCACTCCAACATAGGCTCTCAGGGGACCTATGCCTGTTGCCTGGGAAGACGAGCGACAAGCTGGGCAGCGTGGCACACTTGCCCACTCAGACTTTCTTCCTTCCATCTCCTTTACTTAATTTGTTTTTTAAATTGAGTCACTTGTATGTTTTGCTTTGCATTTTCAG
Seq C2 exon
GATAAAGAAGTTCGAGCAGTTTTCCTTAGGTTATTTGCACAACTGTTCCAAGGATACAGGTCATGCCTCCAGCTTATCCGGATCCATGCCGAGCCTGTGATACACTTTCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-Sbf2:NM_177324:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(6.6=37.0),PF0345514=dDENN=PU(0.1=0.0)
A:
NA
C2:
PF0345514=dDENN=PU(45.8=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTGCACCCGGATTTGGAA
R:
TGTGAAAGTGTATCACAGGCTCG
Band lengths:
190-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: