GgaINT0058523 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:16010284-16011116:-
Coord C1 exon
chr5:16010988-16011116
Coord A exon
chr5:16010324-16010987
Coord C2 exon
chr5:16010284-16010323
Length
664 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
GTCTTTTTTTGTTCTTTTAGGGA
3' ss Score
11.99
Exon sequences
Seq C1 exon
CCTGGAGAGTTTATAAATGATCCTTACAACAACTGCACCATTTACAGTTGTACAAGTATCAAGAACCAGCTTATTTCTTCCACATCTGAAATTACATGTCCTGCATTCAACGAGGAGAGCTGCAAACCT
Seq A exon
GTAAGTAGATACGGAAAATGTACCCTCTACTTAATGCATAAATTGCTTCAATTTAGTTCAATCACCTAGCTAAACAATGTCTCATTGACTCTGATGATCATTCTCTAAGGTTTCTCTGTCCCAGTGGCACAGATTTCTGCTTCATCTATATGCAGACCTACAGAGTGTATTAAATAAGATATCTGACAGAGAGTTTATGATTCTTCTGTCAGCTCTCTCTTAGTAGCCAAAAAACTGGTCAGAATTCAGATAAAAGTACTTGCTGATTACTCTGTGAGAGATCGTGCCTAAAAAAGAACTATGTTTTTTTGAATGTCACAGAAATACAAGCTGACCAGTCAGTAGACAGTAACACCATGTACCATACAAATATAGAAGTCTCTGAGAAAATATTTTTTTAATTTTTTTGGAGTGATGATGTGATGGTTACTGTAGACTTCCTTCAAAACTTCATCTGTGTTTCCACAGTCCTCAGTAAAAGTTGTCCAATTGATTTCAAGTCTGTTATAGACCATTATGTTTGTTTATTCTGATAAGTGCTAGAGTTTTAGCTAGTAATTTCTAGCCACTGAAAAATTGCTCTTCTCTGTTATTGACCTAAAAACGTCTTTAATACAGGGAAAGAAAATAATACTATTTTTCCTGTCTTTTTTTGTTCTTTTAG
Seq C2 exon
GGAACTGTTACATTCTTACCTAATGGTTGTTGCAAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]