RnoINT0000868 @ rn6
Intron Retention
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214691747-214692108:+
Coord C1 exon
chr1:214691747-214691875
Coord A exon
chr1:214691876-214692068
Coord C2 exon
chr1:214692069-214692108
Length
193 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TCACTCCTCTTTCTCTTCAGGGC
3' ss Score
12.38
Exon sequences
Seq C1 exon
CCTGGGGAGATACAGAAAAACCCCAACGACAGGTGCACCTTCTTCAGCTGCATGAAAATCAACAATCAGCTCATCTCTTCAGTCTCCAATATCACCTGCCCTGACTTTGACCCAAGTGATTGTGTTCCG
Seq A exon
GTGAGTGGGACCCCTATGGCCCTGTCCATATATGCTCTGCCAGGGGCAGGGGACCCTGGTGCACTAGCTACCTGGTTTCCAGGGGACTTGTTCCATACCCTCCTGTAGGAAAGTCCTTATGTATCCTAGCAAGAAGGGGCGCTCACCTGCTGGGGGTGCCGTGGGATTCTTTCTCACTCCTCTTTCTCTTCAG
Seq C2 exon
GGCTCCATCACATACATGCCGAATGGCTGCTGTAAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602:ENSRNOT00000075002:72
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAGATACAGAAAAACCCCA
R:
TGTCTTACAGCAGCCATTCGG
Band lengths:
166-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]