GgaINT0058649 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:15810971-15812446:-
Coord C1 exon
chr5:15812287-15812446
Coord A exon
chr5:15811211-15812286
Coord C2 exon
chr5:15810971-15811210
Length
1076 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
TATTTTATTTCCTTTTGCAGGGC
3' ss Score
11.24
Exon sequences
Seq C1 exon
TGAGGAGCGTGTCAGTGTGATAAAGAGAGGACAAGATGGTGAAGTACCATTCACAGTCCGCTATATAGGTATGTACACAGTGATTGACACCACCAGCGGACTGATCCTCATGTGGGACAAGAAAACCAGCATCTTCATCAAGCTGAGCCCTGAATTTAAG
Seq A exon
GTGTGGACCTAGTAGTTTAAGTCTAGATTTGGACTGGGTGTTAATTTTTTATCTGACTCAAACAATATCCCAAAGAGGTGATTCCTCTAGCATTCCTGTAGGACATCATATGTTGTTTTCTATTCCTTTGGTACCTTAGGAAGACATGTAAAAATCCTGCTGCTGTTTTGAGTAGTCAAGGCAGCATTCAGTTTCTATTTGTCCTGACAGAACCCGAGTTGGTAAACTGCTTTTGTGGACTAGACTTTGTTAAAATTACTCTCTGAATCTTGGTAAAGATTATCAGACTTCGCTAAGACTACATAGCTACATGTGTAGAAATCAATTCAGTAGTCCTGATCTTGAAAAATCATCCATTGTTTCCAGTACATATTGACACATAAATCCAAATTATTATACTCCAGGAACAAGGAAGTAAAATGCTATGTAAAATGTTATGTATTTTTCAAGTGTATATATGAACAAGTGATAAAGAAAGTACGGACAGAAATATGAAGCTTGGATTCACAGAGAAAGCTTAGCATCTGTTATAGCCTATCACCATTTCACATATTGAAATTTGGAATGAGGTATTTCTGGAAATGTAAGGAAAATGTCATTTATTTTTCCATCTGTCAGCAGTTGTAACAGTAGATTCAATGAGTAGATTATGCGGGTGGACTGGCAGTACTTAAGACAGCTTTGTAAGACTTGTCTTTTGTATGAACATCTATTGTATAAAACAAAACATAAATGAAAAGCATTATGGCGCTGTCAACTAGCTGAGTCCTCATTTCCCTTGTTAAAGATGTACCTAAAAGTTGGTACATCCTCAAAAATGGATAAAATGACCAAGACAGTTGTACTGTTCAGATTTAAAAGAAGGAAAGTCAGTAGCTGTTTGTAGCCTTGGTCATGTTCAGTTGCTGAGGAAACAAATGGCTGCTTTTCCGGAATATCTAAACCTAAAATATCTTCAGTGGGAATCTTTGGGAAAGTTAGAACAGAACGGCACTCTAAGAGCTGAATTTCATGTATTCTTTCAGTTTCAGATCTTTGTTTTCTCACATCCATCATTATTTTATTTCCTTTTGCAG
Seq C2 exon
GGCCAGATCTGTGGCCTCTGTGGAAATTATGATGGCAACGGCATCAATGACTTCACTACAAGGAGTCTGTCTGTAGTGGAAAACGTCCTAGAGTTTGGAAACAGCTGGAAAGTATCCTCTACATGTCCTGATGCTAGCTTCGTAAAGGACCCATGCTCTACCAACCCTTATCGAAAGTCCTGGTCAGAGAAGCAGTGTAGCATCATCAACAGCAATGTCTTTGCTGCCTGTCACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023540:ENSGALT00000039116:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(29.2=38.9),PF0009420=VWD=FE(67.1=100)
A:
NA
C2:
PF0009420=VWD=PD(29.1=28.8),PF087426=C8=PU(28.0=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGCGTGTCAGTGTGAT
R:
ACACTGCTTCTCTGACCAGGA
Band lengths:
358-1434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]