HsaINT0106817 @ hg19
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1257616-1258394:+
Coord C1 exon
chr11:1257616-1257792
Coord A exon
chr11:1257793-1258154
Coord C2 exon
chr11:1258155-1258394
Length
362 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTCTCGCTGCCTCTGCAGGGC
3' ss Score
10.02
Exon sequences
Seq C1 exon
AGCTACGAGCTGATCCTCCAAGAGGGGACCTTTAAGGCGGTGGCGAGAGGGCCGGGTGGGGACCCACCCTACAAGATACGCTACATGGGGATCTTCCTGGTCATCGAGACCCACGGGATGGCCGTGTCCTGGGACCGGAAGACCAGCGTGTTCATCCGACTGCACCAGGACTACAAG
Seq A exon
GTGAGCTCGGGCCGTGCACTCCTAGGCCCTGCAGGACCCTCTCACAGTGACAGAAACCCTGGTGCCAGGTGGGGTCTGTGGGACTCGCTGACCCGTGGGTGCGTGAGCCTGGCTGGTGAGGGCCCTGCCTGTGGCCTCCACAGTGGGCAGAGGATTTTGCAGGGAAGCAGGTGCCACCCAGCGGCCCACCCAGGGACCCACTGCACACCTGTCTCCTACAAGTTCACCAGGCACTGCCTGGGGAACCGGCTGCCCTCCCTCCATCCCCCGAGGGCTCTGGAGCCCAGGGTGGGCTCTGTGCTGCCTCCCACGGGTGCCTGTGGCCCCAGCTCCAGGGCCCCACTCTCTCGCTGCCTCTGCAG
Seq C2 exon
GGCAGGGTCTGCGGCCTGTGCGGGAACTTCGACGACAATGCCATCAATGACTTTGCCACGCGTAGCCGGTCCGTGGTGGGGGACGCACTGGAGTTTGGGAACAGCTGGAAGCTCTCCCCCTCCTGCCCGGACGCCCTGGCACCCAAGGACCCCTGCACGGCCAACCCCTTCCGCAAGTCCTGGGCCCAGAAGCAGTGCAGCATCCTCCACGGCCCCACCTTCGCCGCCTGCCGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-MUC5B:NM_002458:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.9=100)
A:
NA
C2:
PF0009420=VWD=PD(15.4=28.8),PF087426=C8=PU(28.0=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTAAGGCGGTGGCGAGAG
R:
GAGGATGCTGCACTGCTTCTG
Band lengths:
355-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)