RnoINT0095723 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214791865-214792697:+
Coord C1 exon
chr1:214791865-214792044
Coord A exon
chr1:214792045-214792457
Coord C2 exon
chr1:214792458-214792697
Length
413 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTCTCCCTATGTGTCTGCAGGGT
3' ss Score
10.21
Exon sequences
Seq C1 exon
AGCTATGAGCTGATCCTTCATGAGGGGAACTTTAAGGTGGTAGCGCGAGGGCCAAGTGGGGACCCTCCGTACAAGATCAGATACATGGGCATCTTCCTGGTCATTGAGATCCGGAGTGGGATAGTCGTGTCCTGGGACAGGAAGACCAGTGTGTTTGTCCGGCTGCAGCAGCATTATAAG
Seq A exon
GTAAGTGTGGCCACCATGTACCCTGCTTCTAGGCTCAGCTCCGACAGGTCTAAGGCTGGAAGCTGACAAGGCAACTGAGGGCTGATCCACATTGAAAAGCCCTGGCCACCAAGGTCACACACAATGCCAGTTTCCAAGAGGGATGAGTTAAGATCGCAATGAATAATGGGTGTACTGAAACCAAGATTGGTGGCCTTGCCCTGTCCACAGGCCTGTGCAGAGACAGTCTTCTATAGAGAAGACGTGCAGTTTACCCTCCTGCCCCAGGACCTACTTCCTATATAACATTTCGTTTGGAAGTTCACTGGGTACAATCCAGGGGAAATGGGTTCTCCCTATGTTCTACTCCCCATCCAGGCTCTGTGCCACCTCACGGAACTGTCTGAGGATTCTCTCTCCCTATGTGTCTGCAG
Seq C2 exon
GGTAGGGTCTGCGGCCTGTGTGGGAACTTTGATGACAATGCCATCAATGACTTCACCACACGCAGCCAGTCTGTGGTGGGTGATGTGCTGGAGTTTGGAAATAGCTGGAAGTTCTCCCCATCCTGCCCGGATGCCCCAGTTCCCAAGGATCCCTGCATCGCCAACCCTTACCGCAAGTCCTGGGCCCAGAAAAAATGTAGCATCATCAACAGCGCAACTTTCGCTGCCTGCCACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(39.1=100)
A:
NA
C2:
PF0009420=VWD=PD(15.2=28.8),PF087426=C8=PU(28.0=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTAAGGTGGTAGCGCGAGG
R:
TTTTTCTGGGCCCAGGACTTG
Band lengths:
345-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]