DreINT0099047 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8295860-8296359:+
Coord C1 exon
chr25:8295860-8296039
Coord A exon
chr25:8296040-8296119
Coord C2 exon
chr25:8296120-8296359
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
CCGCATGATCTCTGTTGCAGGGC
3' ss Score
8.6
Exon sequences
Seq C1 exon
AGATATGAGATGATTTTATCAGAGGATGATGGCGTGAAAGTTGTTGAAGGCAACGGCACAGAATACAAATATCAAATCAATTATGGAGGCATATATGTGGTCATAGAGATCGAAGGTCTTCTGAACCTAATCTGGGATGAGAAAACAAGTGTGATGATCCAGCTCCATCCCAAATTAAAG
Seq A exon
GTATGCATTCCTTACAAGCACACCTTTATGTAACCTTTATTCTACTACTCATCTAAACATCCGCATGATCTCTGTTGCAG
Seq C2 exon
GGCAATGTGTGTGGACTGTGTGGAAACTTTGATGGCAATGCAAACAATGACTTCATGAAGCACAATGGAGAAGTGGTGACAGATCCAGAGGAGTTTGGCAATAGCTGGAAGGTGGATTCAAATTGTCCTGATGTGACAAATGTGATGCATCCTTGTGAAGCACATCCACATAGGAATTCCTGGGCTATCAAGCAATGCAGAATCATCACAAGCCCTGTCTTTACAGATTGTCATTCACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(39.6=100)
A:
NA
C2:
PF0009420=VWD=PD(15.4=28.8),PF087426=C8=PU(28.0=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTGAAAGTTGTTGAAGGC
R:
ACACAGTCCACACACATTGCC
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]