HsaINT0106737 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1085936-1086486:+
Coord C1 exon
chr11:1085936-1086115
Coord A exon
chr11:1086116-1086246
Coord C2 exon
chr11:1086247-1086486
Length
131 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GTGATGCTTGTCTCTTGCAGGGC
3' ss Score
10.72
Exon sequences
Seq C1 exon
AGGACGGAGCTGAAGTTGGAAGACAAGCACCGTGTGGTGATCCAGCGTGATGAGGGTCACCACGTGGCCTACACCACGCGGGAGGTGGGCCAGTACCTGGTGGTGGAGTCCAGCACGGGCATCATCGTCATCTGGGACAAGAGGACCACCGTGTTCATCAAGCTGGCTCCCTCCTACAAG
Seq A exon
GTGGGCTGCCTCCCTGCCTGCCCTGCCCCCTCCTGGCCAGCCCCCCACCCCCTGCCCTGGTGTTTGCAGGACAAGCCCCTGTCCTCCCTCCAGCCCCTTTTTGGAGCCCCTGTGATGCTTGTCTCTTGCAG
Seq C2 exon
GGCACCGTGTGTGGCCTGTGTGGGAACTTTGACCACCGCTCCAACAACGACTTCACCACGCGGGACCACATGGTGGTGAGCAGCGAGCTGGACTTCGGGAACAGCTGGAAGGAGGCCCCCACCTGCCCAGATGTGAGCACCAACCCCGAGCCCTGCAGCCTGAACCCGCACCGCCGCTCCTGGGCCGAGAAGCAGTGCAGCATCCTCAAAAGCAGCGTGTTCAGCATCTGCCACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(39.3=100)
A:
NA
C2:
PF0009420=VWD=PD(15.3=28.8),PF087426=C8=PU(28.0=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATCAAGCTGGCTCCCTC
R:
GCTGAACACGCTGCTTTTGAG
Band lengths:
253-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)