GgaINT0058699 @ galGal3
Intron Retention
Gene
ENSGALG00000006752 | MUC2
Description
NA
Coordinates
chr5:16046969-16048224:-
Coord C1 exon
chr5:16048203-16048224
Coord A exon
chr5:16047209-16048202
Coord C2 exon
chr5:16046969-16047208
Length
994 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATTGTCATTTCCTTTTGCAGGGG
3' ss Score
10.83
Exon sequences
Seq C1 exon
CAAACTGACTCCTGACTATAAA
Seq A exon
GTAAGTTAGAATCTCTCAGTCTCTTTCTGAAACAGAAGTATGTGTGAGATAACATAACATAACAGAAACATAGATAGTCTTCTTTTTCTGACTGTGAGTTTAATCCTACATCTCTGCACACTGATGGTTAGCTGATGTTCCTAACACATCTTGGTGGGATTCTAGTAGAGTTTCTTGTATGACAGAAGATGAATAACGTATGATTGCATTAAAGCTAAGTGTCTAAGACATTCTGAGTTTGTGAATAATAAGAGCCAGGCATCCAGAGTAATTCATGGGGTTCTGAATTGACTGTGTAGGCACTCAGAAACCTGTATAGAATCTGAGCACCAAGTTAAAACCAGACTTCCCATGCAGTGTCTGGAGATGGGTCATATTTCTGAAAAACAGCATGCTGAATTATGAAGTACTGAATTCATTGCACTAAATGAGGAGGTACAGGGTTCCATAGCAGGATCATACTATTCCTTCAGAAAGTTGGTGTGCCTTAATTAGTACTACCAAAAATTCACTACTGCAGATAGGTTACTAAATTCTTTCAAGAAAAATTAGCACCTCTTTTTTGTTTCATGGATAAAGAAATGATGCAAGTTACAGAATGAAATTCTCTCAGGTTTATATTAATACTATCTGTGCTATAATTGAGAATAATGGAAAATAAATAATGGAAAATAATTTCTTCTCAGCTGAAAGAAGTTTAGTCACTCTTCAGTCTTATAAGTGAAATGAAGAGAGACAGAGACACAGAAATATAGTAGGTGCAATTGGTTTCAAAGAAGAAAAACATGGCAGCTGAGTAGTTCGCTGAGTACACAGTCAAATGAAAGTTTAATTTCTGTATAAATGATTTGCAAGTGAAGATGAACATGTATCATTTACAGGGAGAGTCTGTTGTACTTTTTAATGTGAATGTTTTTTTCCAATTTTATGAGGGTCTGTTTCTCACTTCCATGATCTATTTAATAGCCATGGATATTGTCATTTCCTTTTGCAG
Seq C2 exon
GGGAAAGTGTGTGGTCTGTGTGGCAACTTTGATGACAAGGCCAACAATGACTTTACAAGCAGGAATGGGCTGCAAGAGACAAATGCTTTGACGTTTGGGAATTCCTGGAAACAATCATCTGTGTGCCCTGATGTCACAGAAGAGATTAAGCCCTGTGATCTGAAACCACATCGCAAGTCCTGGGCAGAGAAAGAATGCAGCCTTATCCTGAGTGAAATCTTTAAAATTTGTCATTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006752:ENSGALT00000010912:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(19.4=85.7)
A:
NA
C2:
PF0009420=VWD=PD(74.2=28.8),PF087426=C8=PU(28.0=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]