Special

GgaINT0059005 @ galGal3

Intron Retention

Gene
Description
NA
Coordinates
chr5:40343283-40343753:-
Coord C1 exon
chr5:40343625-40343753
Coord A exon
chr5:40343424-40343624
Coord C2 exon
chr5:40343283-40343423
Length
201 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TCCATCCTGCACGTGGGCAGATC
3' ss Score
5.42
Exon sequences
Seq C1 exon
ACATGGATGAGTGCGAGACCTTCGGCTCCGAGTTCTGCCGCAATGGACAGTGTCTGAACACGGTGCCGGGCTACAAGTGCTTCTGCCGTACAGGCTACTTCTACGATGTCGGCAGGCTTGAATGCGTAG
Seq A exon
GTAAGATGACCTCAAAGAGCAGCAGGGCCACCAGTGAGTGGAGGGACAGCAGATCTGTCCTCTCAGGGCCAGGTCAGGCCAAGAAGCTCCCTGTGATCCTCCAGGGGATGGGAGAGACGGCAGGCAGCGTTTGGGCAGAGAGTGGGCCCTGCTGCCCCTGCCTGCCAGCCTGAGACACTGTTCCATCCTGCACGTGGGCAG
Seq C2 exon
ATCAGGATGAGTGCCAGAACGAGGTGTACTGCATCAACGGCGAGTGCCTGAACACAGTCGGCTCCTACCACTGCTTCTGCAGCCTCCCGCTTGTGCTGGATGCCACTGGCAACCGCTGCGTGAACCTCTCTGGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258:ENSGALT00000016690:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact

No protein impact description available

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0764510=EGF_CA=WD(100=95.5)
A:
NA
C2:
PF0000822=EGF=WD(100=72.9)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGATGAGTGCGAGACCT
R:
CTGCCCTGCCAGAGAGGTTC
Band lengths:
270-471
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]